ClaRNA

Doublet Group distance statistics: 43642

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Distances from reference structure (by RMSD)

49, 5, 5, 9, 3, 1, 0, 1, 38, 5, 0, 0, 0, 0, 0, 0, 24, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C4 B 0, 0.026, 0.231, 0.436, 0.775 max_d=0.775 avg_d=0.231 std_dev=0.205
C4 A 0, 0.043, 0.292, 0.540, 0.792 max_d=0.792 avg_d=0.292 std_dev=0.249
N3 A 0, 0.083, 0.353, 0.622, 0.885 max_d=0.885 avg_d=0.353 std_dev=0.270
N6 A 0, 0.001, 0.291, 0.580, 2.225 max_d=2.225 avg_d=0.291 std_dev=0.289
N1 B 0, 0.059, 0.411, 0.763, 1.495 max_d=1.495 avg_d=0.411 std_dev=0.352
C5 A 0, 0.067, 0.435, 0.804, 1.248 max_d=1.248 avg_d=0.435 std_dev=0.369
C2 A 0, 0.119, 0.607, 1.095, 1.303 max_d=1.303 avg_d=0.607 std_dev=0.488
N9 B 0, 0.071, 0.571, 1.072, 1.934 max_d=1.934 avg_d=0.571 std_dev=0.501
C6 A 0, -0.103, 0.423, 0.949, 1.800 max_d=1.800 avg_d=0.423 std_dev=0.526
N3 B 0, 0.077, 0.617, 1.157, 1.373 max_d=1.373 avg_d=0.617 std_dev=0.540
N1 A 0, 0.099, 0.669, 1.239, 1.806 max_d=1.806 avg_d=0.669 std_dev=0.570
C2 B 0, 0.082, 0.693, 1.305, 1.569 max_d=1.569 avg_d=0.693 std_dev=0.612
C6 B 0, 0.013, 0.632, 1.251, 1.912 max_d=1.912 avg_d=0.632 std_dev=0.619
C5 B 0, 0.093, 0.722, 1.351, 1.788 max_d=1.788 avg_d=0.722 std_dev=0.629
N9 A 0, 0.093, 0.775, 1.458, 2.066 max_d=2.066 avg_d=0.775 std_dev=0.683
C1' B 0, -0.182, 0.539, 1.260, 2.699 max_d=2.699 avg_d=0.539 std_dev=0.721
N7 A 0, 0.173, 0.941, 1.708, 2.311 max_d=2.311 avg_d=0.941 std_dev=0.768
N6 B 0, -0.006, 0.795, 1.597, 2.491 max_d=2.491 avg_d=0.795 std_dev=0.801
C8 A 0, 0.188, 1.100, 2.013, 2.620 max_d=2.620 avg_d=1.100 std_dev=0.912
O4' A 0, 0.026, 0.972, 1.918, 3.192 max_d=3.192 avg_d=0.972 std_dev=0.946
C1' A 0, -0.002, 0.996, 1.994, 3.107 max_d=3.107 avg_d=0.996 std_dev=0.998
C8 B 0, 0.149, 1.184, 2.219, 2.592 max_d=2.592 avg_d=1.184 std_dev=1.035
O4' B 0, 0.133, 1.195, 2.257, 3.596 max_d=3.596 avg_d=1.195 std_dev=1.062
N7 B 0, 0.165, 1.351, 2.536, 3.130 max_d=3.130 avg_d=1.351 std_dev=1.185
O3' A 0, 0.116, 1.375, 2.634, 3.844 max_d=3.844 avg_d=1.375 std_dev=1.259
C3' A 0, -0.101, 1.212, 2.524, 3.985 max_d=3.985 avg_d=1.212 std_dev=1.313
C4' A 0, -0.221, 1.111, 2.443, 4.034 max_d=4.034 avg_d=1.111 std_dev=1.332
C2' A 0, -0.111, 1.357, 2.825, 4.461 max_d=4.461 avg_d=1.357 std_dev=1.468
C4' B 0, 0.150, 1.695, 3.241, 3.981 max_d=3.981 avg_d=1.695 std_dev=1.545
C2' B 0, 0.075, 1.634, 3.193, 4.136 max_d=4.136 avg_d=1.634 std_dev=1.559
O5' A 0, 0.194, 1.827, 3.459, 5.345 max_d=5.345 avg_d=1.827 std_dev=1.632
C5' A 0, -0.059, 1.583, 3.226, 5.203 max_d=5.203 avg_d=1.583 std_dev=1.642
OP2 A 0, 0.424, 2.151, 3.877, 5.189 max_d=5.189 avg_d=2.151 std_dev=1.726
C3' B 0, 0.051, 1.816, 3.581, 4.954 max_d=4.954 avg_d=1.816 std_dev=1.765
O2' A 0, 0.088, 2.021, 3.954, 5.899 max_d=5.899 avg_d=2.021 std_dev=1.933
O2' B 0, 0.133, 2.231, 4.329, 5.207 max_d=5.207 avg_d=2.231 std_dev=2.098
P A 0, 0.409, 2.515, 4.621, 5.645 max_d=5.645 avg_d=2.515 std_dev=2.106
O3' B 0, -0.275, 1.936, 4.146, 6.857 max_d=6.857 avg_d=1.936 std_dev=2.211
OP1 B 0, 0.464, 2.805, 5.145, 5.700 max_d=5.700 avg_d=2.805 std_dev=2.341
O5' B 0, 0.267, 2.675, 5.083, 5.636 max_d=5.636 avg_d=2.675 std_dev=2.408
C5' B 0, 0.208, 2.620, 5.031, 5.496 max_d=5.496 avg_d=2.620 std_dev=2.411
OP2 B 0, 0.376, 2.801, 5.226, 7.421 max_d=7.421 avg_d=2.801 std_dev=2.425
P B 0, 0.308, 2.760, 5.212, 5.661 max_d=5.661 avg_d=2.760 std_dev=2.452
OP1 A 0, 0.454, 3.370, 6.285, 8.137 max_d=8.137 avg_d=3.370 std_dev=2.916

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.04 0.01 0.02 0.02 0.01 0.02 0.11 0.03 0.02 0.04 0.04 0.02 0.01 0.01 0.02 0.31 0.01 0.27 0.51 0.23 0.33
C2 0.04 0.00 0.46 0.41 0.01 0.11 0.03 0.19 0.05 0.03 0.01 0.01 0.01 0.03 0.02 0.30 0.16 0.25 0.23 0.77 0.57 0.31
C2' 0.01 0.46 0.00 0.01 0.24 0.02 0.12 0.24 0.21 0.23 0.37 0.46 0.14 0.12 0.02 0.00 0.02 0.02 0.57 0.77 0.54 0.78
C3' 0.02 0.41 0.01 0.00 0.35 0.01 0.41 0.03 0.45 0.31 0.46 0.36 0.46 0.39 0.26 0.02 0.01 0.03 0.13 0.19 0.25 0.30
C4 0.02 0.01 0.24 0.35 0.00 0.06 0.01 0.14 0.01 0.01 0.02 0.00 0.01 0.01 0.01 0.16 0.08 0.14 0.24 0.76 0.52 0.28
C4' 0.01 0.11 0.02 0.01 0.06 0.00 0.09 0.01 0.07 0.17 0.09 0.11 0.09 0.15 0.07 0.35 0.04 0.01 0.02 0.31 0.31 0.12
C5 0.02 0.03 0.12 0.41 0.01 0.09 0.00 0.15 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.25 0.18 0.08 0.27 0.90 0.73 0.29
C5' 0.11 0.19 0.24 0.03 0.14 0.01 0.15 0.00 0.16 0.21 0.16 0.18 0.16 0.21 0.13 0.12 0.23 0.01 0.01 0.43 0.45 0.02
C6 0.03 0.05 0.21 0.45 0.01 0.07 0.01 0.16 0.00 0.02 0.02 0.03 0.00 0.01 0.01 0.22 0.21 0.14 0.27 0.93 0.82 0.31
C8 0.02 0.03 0.23 0.31 0.01 0.17 0.01 0.21 0.02 0.00 0.02 0.01 0.02 0.00 0.01 0.43 0.17 0.14 0.32 0.88 0.58 0.28
N1 0.04 0.01 0.37 0.46 0.02 0.09 0.01 0.16 0.02 0.02 0.00 0.01 0.01 0.02 0.03 0.21 0.19 0.20 0.24 0.86 0.73 0.30
N3 0.04 0.01 0.46 0.36 0.00 0.11 0.01 0.18 0.03 0.01 0.01 0.00 0.01 0.01 0.01 0.30 0.15 0.24 0.23 0.69 0.45 0.30
N6 0.02 0.01 0.14 0.46 0.01 0.09 0.01 0.16 0.00 0.02 0.01 0.01 0.00 0.02 0.01 0.28 0.27 0.10 0.31 0.99 0.99 0.36
N7 0.01 0.03 0.12 0.39 0.01 0.15 0.01 0.21 0.01 0.00 0.02 0.01 0.02 0.00 0.01 0.41 0.24 0.07 0.33 0.98 0.80 0.31
N9 0.01 0.02 0.02 0.26 0.01 0.07 0.01 0.13 0.01 0.01 0.03 0.01 0.01 0.01 0.00 0.20 0.07 0.02 0.26 0.71 0.39 0.27
O2' 0.02 0.30 0.00 0.02 0.16 0.35 0.25 0.12 0.22 0.43 0.21 0.30 0.28 0.41 0.20 0.00 0.06 0.23 0.41 0.68 0.55 0.71
O3' 0.31 0.16 0.02 0.01 0.08 0.04 0.18 0.23 0.21 0.17 0.19 0.15 0.27 0.24 0.07 0.06 0.00 0.24 0.27 0.69 0.30 0.26
O4' 0.01 0.25 0.02 0.03 0.14 0.01 0.08 0.01 0.14 0.14 0.20 0.24 0.10 0.07 0.02 0.23 0.24 0.00 0.09 0.31 0.22 0.19
O5' 0.27 0.23 0.57 0.13 0.24 0.02 0.27 0.01 0.27 0.32 0.24 0.23 0.31 0.33 0.26 0.41 0.27 0.09 0.00 0.02 0.02 0.01
OP1 0.51 0.77 0.77 0.19 0.76 0.31 0.90 0.43 0.93 0.88 0.86 0.69 0.99 0.98 0.71 0.68 0.69 0.31 0.02 0.00 0.02 0.01
OP2 0.23 0.57 0.54 0.25 0.52 0.31 0.73 0.45 0.82 0.58 0.73 0.45 0.99 0.80 0.39 0.55 0.30 0.22 0.02 0.02 0.00 0.01
P 0.33 0.31 0.78 0.30 0.28 0.12 0.29 0.02 0.31 0.28 0.30 0.30 0.36 0.31 0.27 0.71 0.26 0.19 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.39 0.68 0.69 0.43 0.81 1.07 1.24 2.07 1.25 1.43 0.92 0.57 0.82 1.64 0.85 1.40 0.30 1.08 2.38 2.10 2.79 2.76
C2 0.25 0.55 0.91 0.47 0.30 1.07 0.55 1.79 0.62 0.65 0.52 0.49 0.27 0.83 0.23 1.62 0.88 0.93 1.84 1.17 2.09 1.99
C2' 0.65 1.08 1.00 0.62 1.16 0.97 1.57 1.91 1.63 1.66 1.33 0.94 0.90 1.91 1.13 1.64 0.48 1.07 2.23 2.24 2.70 2.73
C3' 0.68 1.03 0.75 0.69 1.13 1.37 1.51 2.39 1.53 1.69 1.26 0.89 0.87 1.87 1.14 1.36 0.36 1.36 2.63 2.60 2.87 3.10
C4 0.31 0.44 0.84 0.49 0.21 1.19 0.62 1.97 0.65 0.83 0.41 0.41 0.53 1.03 0.26 1.67 0.90 1.03 2.02 1.52 2.23 2.26
C4' 0.57 0.88 0.74 0.81 0.98 1.27 1.37 2.36 1.37 1.59 1.08 0.77 0.80 1.76 1.03 1.31 0.59 1.16 2.58 2.27 2.65 2.80
C5 0.75 0.59 1.17 1.00 0.30 1.51 0.42 2.16 0.37 0.75 0.26 0.66 0.58 0.89 0.42 1.96 1.45 1.27 2.04 1.54 2.03 2.19
C5' 0.22 0.61 0.38 0.59 0.65 1.17 1.15 2.25 1.14 1.43 0.78 0.50 0.95 1.64 0.72 1.27 0.43 1.01 2.25 2.13 2.18 2.44
C6 0.87 0.73 1.32 1.17 0.44 1.59 0.32 2.18 0.25 0.65 0.39 0.80 0.41 0.71 0.51 2.05 1.65 1.31 2.00 1.42 1.90 2.07
C8 0.69 0.42 1.01 0.84 0.29 1.47 0.70 2.21 0.66 1.04 0.24 0.52 0.93 1.24 0.48 1.90 1.22 1.27 2.15 1.85 2.20 2.39
N1 0.60 0.62 1.12 0.89 0.26 1.35 0.25 1.97 0.30 0.49 0.38 0.64 0.25 0.61 0.26 1.85 1.35 1.11 1.86 1.20 1.88 1.94
N3 0.16 0.56 0.82 0.29 0.45 1.00 0.76 1.80 0.81 0.87 0.63 0.47 0.37 1.06 0.41 1.54 0.62 0.92 1.96 1.37 2.32 2.19
N6 0.35 0.65 0.81 0.42 0.25 1.23 0.38 2.24 0.31 0.75 0.39 0.60 0.45 0.83 0.31 1.72 0.45 1.09 2.21 1.66 2.05 2.32
N7 1.01 0.70 1.36 1.24 0.51 1.71 0.59 2.33 0.49 0.96 0.34 0.82 0.82 1.08 0.67 2.16 1.68 1.46 2.16 1.75 2.06 2.30
N9 0.23 0.39 0.71 0.35 0.34 1.17 0.82 2.04 0.83 1.06 0.49 0.33 0.75 1.28 0.42 1.60 0.72 1.05 2.15 1.79 2.39 2.45
O2' 1.12 1.44 1.69 1.28 1.52 0.75 1.86 1.44 1.93 1.89 1.67 1.34 0.73 2.14 1.47 2.17 1.20 0.98 2.05 2.32 2.97 2.71
O3' 0.91 1.41 1.23 0.90 1.34 1.27 1.57 2.22 1.64 1.60 1.53 1.27 0.51 1.74 1.27 1.77 0.71 1.24 2.66 2.48 3.16 3.24
O4' 0.34 0.58 0.54 0.51 0.70 1.15 1.13 2.22 1.12 1.39 0.78 0.49 0.79 1.57 0.78 1.26 0.28 1.07 2.47 2.07 2.67 2.71
O5' 0.71 0.35 0.77 0.77 0.34 1.54 0.90 2.36 0.83 1.32 0.33 0.41 1.13 1.52 0.62 1.69 0.77 1.37 2.25 2.24 2.12 2.49
OP1 1.63 1.47 1.78 1.32 0.92 1.66 0.39 1.84 0.39 0.75 0.87 1.59 0.61 0.88 0.92 2.79 1.60 1.64 1.64 1.78 1.48 1.85
OP2 1.91 1.03 1.93 2.17 1.50 2.70 1.84 3.24 1.66 2.28 1.16 1.22 2.19 2.41 1.80 2.25 1.99 2.47 2.85 2.82 2.44 2.91
P 1.26 0.61 1.29 1.27 0.77 1.90 1.19 2.52 1.06 1.66 0.53 0.78 1.59 1.87 1.05 2.06 1.20 1.76 2.31 2.50 2.16 2.57

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.01 0.01 0.02 0.01 0.01 0.05 0.02 0.01 0.04 0.03 0.02 0.01 0.01 0.02 0.37 0.01 0.32 0.66 0.16 0.16
C2 0.03 0.00 0.45 0.34 0.01 0.12 0.03 0.11 0.06 0.02 0.02 0.01 0.01 0.03 0.01 0.20 0.28 0.30 0.50 0.92 0.50 0.33
C2' 0.01 0.45 0.00 0.00 0.24 0.01 0.13 0.19 0.22 0.20 0.36 0.44 0.17 0.10 0.03 0.00 0.04 0.03 0.67 0.92 0.78 0.74
C3' 0.01 0.34 0.00 0.00 0.33 0.01 0.41 0.02 0.43 0.35 0.41 0.29 0.50 0.42 0.26 0.02 0.01 0.02 0.40 0.76 0.49 0.48
C4 0.02 0.01 0.24 0.33 0.00 0.05 0.00 0.10 0.02 0.01 0.03 0.01 0.01 0.01 0.00 0.14 0.17 0.16 0.50 0.95 0.51 0.35
C4' 0.01 0.12 0.01 0.01 0.05 0.00 0.13 0.01 0.09 0.28 0.06 0.12 0.14 0.26 0.11 0.32 0.03 0.00 0.02 0.39 0.30 0.11
C5 0.01 0.03 0.13 0.41 0.00 0.13 0.00 0.21 0.01 0.01 0.02 0.01 0.01 0.00 0.01 0.28 0.08 0.08 0.58 1.17 0.77 0.53
C5' 0.05 0.11 0.19 0.02 0.10 0.01 0.21 0.00 0.18 0.35 0.11 0.11 0.25 0.35 0.14 0.12 0.24 0.02 0.01 0.31 0.26 0.02
C6 0.02 0.06 0.22 0.43 0.02 0.09 0.01 0.18 0.00 0.01 0.02 0.04 0.01 0.01 0.01 0.23 0.11 0.15 0.60 1.21 0.85 0.57
C8 0.01 0.02 0.20 0.35 0.01 0.28 0.01 0.35 0.01 0.00 0.02 0.01 0.01 0.00 0.01 0.47 0.13 0.18 0.58 1.16 0.70 0.52
N1 0.04 0.02 0.36 0.41 0.03 0.06 0.02 0.11 0.02 0.02 0.00 0.01 0.01 0.02 0.03 0.13 0.17 0.24 0.57 1.07 0.71 0.47
N3 0.03 0.01 0.44 0.29 0.01 0.12 0.01 0.11 0.04 0.01 0.01 0.00 0.01 0.01 0.01 0.22 0.33 0.28 0.46 0.83 0.38 0.26
N6 0.02 0.01 0.17 0.50 0.01 0.14 0.01 0.25 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.32 0.12 0.12 0.37 1.37 0.27 0.36
N7 0.01 0.03 0.10 0.42 0.01 0.26 0.00 0.35 0.01 0.00 0.02 0.01 0.01 0.00 0.01 0.46 0.16 0.09 0.64 1.32 0.92 0.65
N9 0.01 0.01 0.03 0.26 0.00 0.11 0.01 0.14 0.01 0.01 0.03 0.01 0.01 0.01 0.00 0.24 0.13 0.01 0.46 0.89 0.41 0.30
O2' 0.02 0.20 0.00 0.02 0.14 0.32 0.28 0.12 0.23 0.47 0.13 0.22 0.32 0.46 0.24 0.00 0.05 0.22 0.32 0.91 0.67 0.57
O3' 0.37 0.28 0.04 0.01 0.17 0.03 0.08 0.24 0.11 0.13 0.17 0.33 0.12 0.16 0.13 0.05 0.00 0.23 0.20 0.61 0.43 0.26
O4' 0.01 0.30 0.03 0.02 0.16 0.00 0.08 0.02 0.15 0.18 0.24 0.28 0.12 0.09 0.01 0.22 0.23 0.00 0.07 0.79 0.44 0.36
O5' 0.32 0.50 0.67 0.40 0.50 0.02 0.58 0.01 0.60 0.58 0.57 0.46 0.37 0.64 0.46 0.32 0.20 0.07 0.00 0.02 0.02 0.01
OP1 0.66 0.92 0.92 0.76 0.95 0.39 1.17 0.31 1.21 1.16 1.07 0.83 1.37 1.32 0.89 0.91 0.61 0.79 0.02 0.00 0.02 0.01
OP2 0.16 0.50 0.78 0.49 0.51 0.30 0.77 0.26 0.85 0.70 0.71 0.38 0.27 0.92 0.41 0.67 0.43 0.44 0.02 0.02 0.00 0.01
P 0.16 0.33 0.74 0.48 0.35 0.11 0.53 0.02 0.57 0.52 0.47 0.26 0.36 0.65 0.30 0.57 0.26 0.36 0.01 0.01 0.01 0.00