ClaRNA

Doublet Group distance statistics: 43717

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Distances from reference structure (by RMSD)

45, 5, 2, 5, 19, 2, 7, 6, 5, 3, 4, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C4 B 0, 0.015, 0.128, 0.241, 0.415 max_d=0.415 avg_d=0.128 std_dev=0.113
C4 A 0, 0.001, 0.160, 0.319, 0.598 max_d=0.598 avg_d=0.160 std_dev=0.159
N3 A 0, 0.003, 0.181, 0.359, 0.894 max_d=0.894 avg_d=0.181 std_dev=0.178
N9 B 0, 0.000, 0.185, 0.370, 0.780 max_d=0.780 avg_d=0.185 std_dev=0.185
N9 A 0, -0.006, 0.254, 0.514, 1.058 max_d=1.058 avg_d=0.254 std_dev=0.260
C2 A 0, 0.010, 0.275, 0.540, 1.242 max_d=1.242 avg_d=0.275 std_dev=0.265
C5 A 0, 0.031, 0.297, 0.563, 1.087 max_d=1.087 avg_d=0.297 std_dev=0.266
N3 B 0, -0.025, 0.254, 0.533, 1.013 max_d=1.013 avg_d=0.254 std_dev=0.279
C5 B 0, 0.005, 0.309, 0.612, 1.283 max_d=1.283 avg_d=0.309 std_dev=0.304
N1 A 0, 0.041, 0.360, 0.679, 1.308 max_d=1.308 avg_d=0.360 std_dev=0.319
N2 A 0, 0.017, 0.345, 0.674, 1.553 max_d=1.553 avg_d=0.345 std_dev=0.329
C6 A 0, 0.053, 0.389, 0.726, 1.479 max_d=1.479 avg_d=0.389 std_dev=0.336
C1' A 0, 0.019, 0.369, 0.719, 1.473 max_d=1.473 avg_d=0.369 std_dev=0.350
C1' B 0, -0.015, 0.336, 0.686, 1.435 max_d=1.435 avg_d=0.336 std_dev=0.350
C8 B 0, -0.015, 0.357, 0.729, 1.411 max_d=1.411 avg_d=0.357 std_dev=0.372
C8 A 0, -0.013, 0.372, 0.757, 1.714 max_d=1.714 avg_d=0.372 std_dev=0.385
N7 A 0, 0.021, 0.415, 0.809, 1.784 max_d=1.784 avg_d=0.415 std_dev=0.394
C2 B 0, -0.030, 0.387, 0.803, 1.533 max_d=1.533 avg_d=0.387 std_dev=0.416
N7 B 0, -0.010, 0.433, 0.877, 1.839 max_d=1.839 avg_d=0.433 std_dev=0.443
O6 A 0, 0.062, 0.515, 0.967, 2.173 max_d=2.173 avg_d=0.515 std_dev=0.453
C6 B 0, -0.019, 0.445, 0.910, 1.872 max_d=1.872 avg_d=0.445 std_dev=0.464
N1 B 0, -0.022, 0.444, 0.911, 1.745 max_d=1.745 avg_d=0.444 std_dev=0.467
N2 B 0, -0.132, 0.505, 1.143, 2.215 max_d=2.215 avg_d=0.505 std_dev=0.638
C2' B 0, -0.059, 0.650, 1.360, 2.582 max_d=2.582 avg_d=0.650 std_dev=0.710
O6 B 0, -0.138, 0.596, 1.330, 2.811 max_d=2.811 avg_d=0.596 std_dev=0.734
O2' B 0, -0.111, 0.767, 1.644, 3.257 max_d=3.257 avg_d=0.767 std_dev=0.878
C2' A 0, -0.047, 0.885, 1.817, 3.159 max_d=3.159 avg_d=0.885 std_dev=0.932
O4' B 0, -0.094, 0.872, 1.839, 2.934 max_d=2.934 avg_d=0.872 std_dev=0.966
O4' A 0, -0.063, 0.950, 1.963, 3.369 max_d=3.369 avg_d=0.950 std_dev=1.013
O2' A 0, -0.082, 1.020, 2.121, 4.461 max_d=4.461 avg_d=1.020 std_dev=1.102
C3' B 0, -0.169, 1.173, 2.515, 3.839 max_d=3.839 avg_d=1.173 std_dev=1.342
C4' B 0, -0.171, 1.234, 2.640, 3.996 max_d=3.996 avg_d=1.234 std_dev=1.405
C3' A 0, -0.076, 1.392, 2.860, 4.714 max_d=4.714 avg_d=1.392 std_dev=1.468
C4' A 0, -0.090, 1.466, 3.021, 4.996 max_d=4.996 avg_d=1.466 std_dev=1.555
O3' A 0, -0.071, 1.634, 3.338, 5.492 max_d=5.492 avg_d=1.634 std_dev=1.705
O3' B 0, -0.264, 1.537, 3.339, 5.291 max_d=5.291 avg_d=1.537 std_dev=1.801
C5' B 0, -0.271, 1.664, 3.599, 5.853 max_d=5.853 avg_d=1.664 std_dev=1.935
O5' B 0, -0.107, 1.936, 3.978, 6.888 max_d=6.888 avg_d=1.936 std_dev=2.043
O5' A 0, -0.154, 1.969, 4.093, 6.228 max_d=6.228 avg_d=1.969 std_dev=2.124
C5' A 0, -0.156, 2.047, 4.249, 6.578 max_d=6.578 avg_d=2.047 std_dev=2.202
P A 0, -0.237, 2.482, 5.201, 8.916 max_d=8.916 avg_d=2.482 std_dev=2.719
OP2 A 0, -0.205, 2.525, 5.255, 10.024 max_d=10.024 avg_d=2.525 std_dev=2.730
P B 0, -0.122, 2.651, 5.425, 9.089 max_d=9.089 avg_d=2.651 std_dev=2.774
OP2 B 0, -0.100, 2.748, 5.596, 9.297 max_d=9.297 avg_d=2.748 std_dev=2.848
OP1 A 0, -0.308, 2.856, 6.020, 9.679 max_d=9.679 avg_d=2.856 std_dev=3.164
OP1 B 0, -0.144, 3.230, 6.604, 10.273 max_d=10.273 avg_d=3.230 std_dev=3.374

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N2N3N7N9O2'O3'O4'O5'O6OP1OP2P
C1' 0.00 0.03 0.00 0.02 0.01 0.01 0.01 0.07 0.02 0.01 0.03 0.03 0.02 0.01 0.01 0.01 0.36 0.00 0.16 0.02 0.40 0.25 0.20
C2 0.03 0.00 0.50 0.33 0.01 0.31 0.02 0.46 0.03 0.02 0.01 0.00 0.01 0.02 0.01 0.41 0.35 0.49 0.30 0.01 0.56 0.49 0.38
C2' 0.00 0.50 0.00 0.00 0.27 0.01 0.15 0.21 0.25 0.22 0.40 0.58 0.49 0.10 0.04 0.00 0.03 0.02 0.47 0.20 0.89 0.67 0.64
C3' 0.02 0.33 0.00 0.00 0.31 0.00 0.41 0.02 0.44 0.40 0.38 0.30 0.28 0.46 0.27 0.01 0.01 0.02 0.12 0.48 0.62 0.25 0.29
C4 0.01 0.01 0.27 0.31 0.00 0.09 0.00 0.20 0.01 0.01 0.02 0.01 0.00 0.00 0.01 0.10 0.19 0.26 0.23 0.01 0.45 0.49 0.35
C4' 0.01 0.31 0.01 0.00 0.09 0.00 0.10 0.01 0.08 0.37 0.19 0.41 0.30 0.30 0.11 0.31 0.04 0.00 0.02 0.10 0.27 0.14 0.09
C5 0.01 0.02 0.15 0.41 0.00 0.10 0.00 0.20 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.22 0.15 0.12 0.38 0.01 0.64 0.76 0.58
C5' 0.07 0.46 0.21 0.02 0.20 0.01 0.20 0.00 0.22 0.45 0.33 0.53 0.43 0.40 0.14 0.11 0.20 0.02 0.01 0.21 0.15 0.16 0.02
C6 0.02 0.03 0.25 0.44 0.01 0.08 0.01 0.22 0.00 0.01 0.01 0.01 0.02 0.01 0.01 0.14 0.20 0.22 0.37 0.00 0.72 0.81 0.60
C8 0.01 0.02 0.22 0.40 0.01 0.37 0.01 0.45 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.59 0.18 0.26 0.57 0.01 0.61 0.78 0.69
N1 0.03 0.01 0.40 0.38 0.02 0.19 0.01 0.33 0.01 0.01 0.00 0.01 0.01 0.01 0.02 0.22 0.26 0.39 0.29 0.01 0.63 0.64 0.46
N2 0.03 0.00 0.58 0.30 0.01 0.41 0.01 0.53 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.61 0.44 0.58 0.30 0.01 0.54 0.40 0.31
N3 0.02 0.01 0.49 0.28 0.00 0.30 0.01 0.43 0.02 0.01 0.01 0.01 0.00 0.01 0.01 0.41 0.36 0.48 0.28 0.01 0.49 0.39 0.32
N7 0.01 0.02 0.10 0.46 0.00 0.30 0.00 0.40 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.51 0.22 0.13 0.60 0.02 0.79 0.97 0.81
N9 0.01 0.01 0.04 0.27 0.01 0.11 0.01 0.14 0.01 0.00 0.02 0.01 0.01 0.00 0.00 0.22 0.11 0.01 0.25 0.01 0.37 0.44 0.34
O2' 0.01 0.41 0.00 0.01 0.10 0.31 0.22 0.11 0.14 0.59 0.22 0.61 0.41 0.51 0.22 0.00 0.05 0.22 0.35 0.20 0.88 0.77 0.61
O3' 0.36 0.35 0.03 0.01 0.19 0.04 0.15 0.20 0.20 0.18 0.26 0.44 0.36 0.22 0.11 0.05 0.00 0.24 0.23 0.24 0.42 0.41 0.25
O4' 0.00 0.49 0.02 0.02 0.26 0.00 0.12 0.02 0.22 0.26 0.39 0.58 0.48 0.13 0.01 0.22 0.24 0.00 0.11 0.16 0.17 0.21 0.14
O5' 0.16 0.30 0.47 0.12 0.23 0.02 0.38 0.01 0.37 0.57 0.29 0.30 0.28 0.60 0.25 0.35 0.23 0.11 0.00 0.45 0.02 0.01 0.01
O6 0.02 0.01 0.20 0.48 0.01 0.10 0.01 0.21 0.00 0.01 0.01 0.01 0.01 0.02 0.01 0.20 0.24 0.16 0.45 0.00 0.88 0.93 0.73
OP1 0.40 0.56 0.89 0.62 0.45 0.27 0.64 0.15 0.72 0.61 0.63 0.54 0.49 0.79 0.37 0.88 0.42 0.17 0.02 0.88 0.00 0.01 0.01
OP2 0.25 0.49 0.67 0.25 0.49 0.14 0.76 0.16 0.81 0.78 0.64 0.40 0.39 0.97 0.44 0.77 0.41 0.21 0.01 0.93 0.01 0.00 0.01
P 0.20 0.38 0.64 0.29 0.35 0.09 0.58 0.02 0.60 0.69 0.46 0.31 0.32 0.81 0.34 0.61 0.25 0.14 0.01 0.73 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N2N3N7N9O2'O3'O4'O5'O6OP1OP2P
C1' 0.33 0.65 0.42 0.66 0.38 0.48 0.35 0.67 0.47 0.35 0.65 0.84 0.52 0.34 0.32 0.77 0.65 0.33 1.19 0.50 1.63 1.90 1.59
C2 0.41 0.53 0.55 0.91 0.36 0.61 0.35 0.74 0.32 0.48 0.47 0.64 0.44 0.48 0.39 0.69 0.95 0.40 1.14 0.26 1.39 1.79 1.40
C2' 0.43 0.96 0.46 0.57 0.59 0.42 0.55 0.62 0.75 0.39 0.97 1.22 0.78 0.41 0.44 0.84 0.54 0.37 1.14 0.82 1.61 1.84 1.56
C3' 0.94 1.28 0.92 0.62 1.06 0.71 1.04 0.75 1.17 0.89 1.29 1.50 1.17 0.93 0.96 1.28 0.53 0.86 1.17 1.28 1.72 1.83 1.61
C4 0.27 0.58 0.37 0.72 0.29 0.50 0.25 0.69 0.37 0.32 0.57 0.79 0.44 0.30 0.25 0.69 0.72 0.29 1.18 0.37 1.53 1.88 1.53
C4' 0.64 0.82 0.66 0.66 0.69 0.58 0.70 0.72 0.77 0.67 0.84 0.97 0.74 0.68 0.65 0.99 0.63 0.59 1.22 0.86 1.75 1.93 1.66
C5 0.28 0.62 0.39 0.72 0.31 0.52 0.27 0.72 0.43 0.33 0.63 0.83 0.46 0.30 0.26 0.71 0.71 0.32 1.22 0.47 1.54 1.90 1.55
C5' 0.86 0.97 0.87 0.83 0.90 0.79 0.93 0.91 0.98 0.91 1.00 1.07 0.91 0.93 0.88 1.15 0.79 0.81 1.35 1.10 1.87 2.02 1.78
C6 0.30 0.54 0.43 0.82 0.26 0.58 0.23 0.76 0.31 0.41 0.54 0.77 0.39 0.40 0.28 0.66 0.81 0.35 1.22 0.32 1.47 1.86 1.49
C8 0.42 0.74 0.53 0.68 0.49 0.55 0.47 0.74 0.63 0.42 0.77 0.93 0.61 0.40 0.41 0.86 0.65 0.41 1.26 0.71 1.67 1.95 1.65
N1 0.41 0.50 0.56 0.92 0.35 0.64 0.36 0.77 0.31 0.51 0.46 0.65 0.41 0.52 0.40 0.68 0.95 0.42 1.18 0.28 1.39 1.79 1.40
N2 0.45 0.45 0.68 1.04 0.40 0.68 0.44 0.78 0.39 0.56 0.41 0.56 0.41 0.58 0.46 0.65 1.08 0.43 1.11 0.40 1.26 1.68 1.29
N3 0.31 0.54 0.43 0.80 0.29 0.53 0.25 0.68 0.29 0.37 0.50 0.70 0.42 0.36 0.29 0.66 0.83 0.31 1.14 0.23 1.46 1.83 1.46
N7 0.39 0.74 0.49 0.69 0.47 0.56 0.44 0.75 0.62 0.38 0.78 0.94 0.60 0.36 0.38 0.83 0.66 0.40 1.26 0.72 1.63 1.95 1.63
N9 0.32 0.65 0.41 0.67 0.38 0.49 0.34 0.69 0.48 0.34 0.66 0.86 0.51 0.32 0.31 0.77 0.65 0.33 1.21 0.53 1.61 1.92 1.59
O2' 0.43 0.61 0.48 0.90 0.34 0.75 0.33 0.96 0.37 0.57 0.59 0.84 0.45 0.52 0.41 0.60 0.86 0.57 1.40 0.32 1.73 2.02 1.74
O3' 0.85 1.04 0.83 0.64 0.90 0.73 0.87 0.80 0.94 0.81 1.03 1.21 0.97 0.81 0.85 1.14 0.55 0.84 1.23 0.98 1.80 1.87 1.67
O4' 0.40 0.56 0.49 0.74 0.41 0.55 0.41 0.73 0.48 0.44 0.58 0.67 0.47 0.43 0.40 0.79 0.75 0.40 1.25 0.50 1.72 1.97 1.67
O5' 1.15 1.30 1.17 0.98 1.22 0.99 1.25 1.07 1.32 1.19 1.34 1.47 1.24 1.23 1.18 1.46 0.90 1.05 1.46 1.51 1.95 2.08 1.87
O6 0.31 0.57 0.46 0.84 0.26 0.62 0.24 0.79 0.34 0.45 0.59 0.81 0.40 0.44 0.30 0.65 0.84 0.38 1.14 0.40 1.29 1.73 1.35
OP1 1.89 1.87 1.94 1.67 1.89 1.74 1.90 1.78 1.89 1.92 1.87 2.04 1.87 1.93 1.90 2.18 1.53 1.81 2.02 2.09 2.45 2.47 2.35
OP2 1.93 2.03 2.01 1.69 2.00 1.68 2.03 1.68 2.06 1.98 2.05 2.24 2.00 2.02 1.97 2.27 1.57 1.76 1.94 2.30 2.31 2.35 2.22
P 1.65 1.71 1.70 1.38 1.70 1.42 1.73 1.44 1.75 1.70 1.74 1.90 1.69 1.73 1.68 1.97 1.25 1.52 1.73 1.98 2.17 2.23 2.08

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N2N3N7N9O2'O3'O4'O5'O6OP1OP2P
C1' 0.00 0.04 0.00 0.02 0.02 0.01 0.01 0.08 0.02 0.01 0.04 0.04 0.03 0.01 0.01 0.02 0.28 0.00 0.24 0.02 0.36 0.43 0.30
C2 0.04 0.00 0.46 0.41 0.01 0.13 0.03 0.26 0.06 0.02 0.01 0.00 0.01 0.03 0.01 0.37 0.39 0.31 0.42 0.01 0.56 0.77 0.60
C2' 0.00 0.46 0.00 0.01 0.24 0.02 0.12 0.19 0.21 0.22 0.36 0.56 0.44 0.11 0.02 0.00 0.04 0.02 0.37 0.17 0.51 0.58 0.40
C3' 0.02 0.41 0.01 0.00 0.33 0.00 0.37 0.01 0.42 0.28 0.43 0.43 0.35 0.34 0.23 0.02 0.01 0.02 0.31 0.42 0.48 0.38 0.28
C4 0.02 0.01 0.24 0.33 0.00 0.09 0.00 0.18 0.01 0.01 0.03 0.01 0.01 0.01 0.01 0.20 0.22 0.17 0.42 0.01 0.48 0.71 0.54
C4' 0.01 0.13 0.02 0.00 0.09 0.00 0.12 0.01 0.13 0.18 0.12 0.15 0.12 0.17 0.09 0.28 0.02 0.00 0.02 0.12 0.28 0.27 0.13
C5 0.01 0.03 0.12 0.37 0.00 0.12 0.00 0.20 0.01 0.01 0.02 0.01 0.01 0.00 0.01 0.25 0.21 0.08 0.51 0.01 0.58 0.86 0.65
C5' 0.08 0.26 0.19 0.01 0.18 0.01 0.20 0.00 0.23 0.19 0.25 0.29 0.23 0.21 0.12 0.11 0.20 0.01 0.01 0.20 0.24 0.27 0.02
C6 0.02 0.06 0.21 0.42 0.01 0.13 0.01 0.23 0.00 0.01 0.02 0.01 0.03 0.01 0.01 0.25 0.29 0.14 0.53 0.00 0.65 0.94 0.72
C8 0.01 0.02 0.22 0.28 0.01 0.18 0.01 0.19 0.01 0.00 0.02 0.01 0.01 0.00 0.00 0.39 0.17 0.17 0.51 0.01 0.48 0.72 0.55
N1 0.04 0.01 0.36 0.43 0.03 0.12 0.02 0.25 0.02 0.02 0.00 0.01 0.02 0.02 0.03 0.29 0.35 0.25 0.50 0.01 0.64 0.89 0.69
N2 0.04 0.00 0.56 0.43 0.01 0.15 0.01 0.29 0.01 0.01 0.01 0.00 0.01 0.01 0.02 0.48 0.49 0.36 0.32 0.01 0.53 0.61 0.59
N3 0.03 0.01 0.44 0.35 0.01 0.12 0.01 0.23 0.03 0.01 0.02 0.01 0.00 0.01 0.01 0.35 0.35 0.30 0.38 0.01 0.48 0.68 0.52
N7 0.01 0.03 0.11 0.34 0.01 0.17 0.00 0.21 0.01 0.00 0.02 0.01 0.01 0.00 0.01 0.38 0.21 0.09 0.56 0.01 0.59 0.90 0.68
N9 0.01 0.01 0.02 0.23 0.01 0.09 0.01 0.12 0.01 0.00 0.03 0.02 0.01 0.01 0.00 0.18 0.10 0.01 0.39 0.01 0.40 0.59 0.44
O2' 0.02 0.37 0.00 0.02 0.20 0.28 0.25 0.11 0.25 0.39 0.29 0.48 0.35 0.38 0.18 0.00 0.07 0.20 0.29 0.27 0.55 0.57 0.36
O3' 0.28 0.39 0.04 0.01 0.22 0.02 0.21 0.20 0.29 0.17 0.35 0.49 0.35 0.21 0.10 0.07 0.00 0.21 0.36 0.31 0.72 0.48 0.41
O4' 0.00 0.31 0.02 0.02 0.17 0.00 0.08 0.01 0.14 0.17 0.25 0.36 0.30 0.09 0.01 0.20 0.21 0.00 0.19 0.10 0.39 0.37 0.32
O5' 0.24 0.42 0.37 0.31 0.42 0.02 0.51 0.01 0.53 0.51 0.50 0.32 0.38 0.56 0.39 0.29 0.36 0.19 0.00 0.40 0.02 0.01 0.01
O6 0.02 0.01 0.17 0.42 0.01 0.12 0.01 0.20 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.27 0.31 0.10 0.40 0.00 0.53 0.78 0.65
OP1 0.36 0.56 0.51 0.48 0.48 0.28 0.58 0.24 0.65 0.48 0.64 0.53 0.48 0.59 0.40 0.55 0.72 0.39 0.02 0.53 0.00 0.01 0.01
OP2 0.43 0.77 0.58 0.38 0.71 0.27 0.86 0.27 0.94 0.72 0.89 0.61 0.68 0.90 0.59 0.57 0.48 0.37 0.01 0.78 0.01 0.00 0.00
P 0.30 0.60 0.40 0.28 0.54 0.13 0.65 0.02 0.72 0.55 0.69 0.59 0.52 0.68 0.44 0.36 0.41 0.32 0.01 0.65 0.01 0.00 0.00