ClaRNA

Doublet Group distance statistics: 43766

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Distances from reference structure (by RMSD)

11, 9, 42, 23, 9, 6, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 7,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N1 A 0, -0.013, 0.179, 0.371, 1.039 max_d=1.039 avg_d=0.179 std_dev=0.192
N1 B 0, -0.064, 0.184, 0.431, 1.341 max_d=1.341 avg_d=0.184 std_dev=0.247
C2 B 0, -0.012, 0.250, 0.512, 1.294 max_d=1.294 avg_d=0.250 std_dev=0.262
C2 A 0, 0.063, 0.333, 0.603, 1.445 max_d=1.445 avg_d=0.333 std_dev=0.270
N3 A 0, 0.050, 0.330, 0.609, 1.614 max_d=1.614 avg_d=0.330 std_dev=0.279
N3 B 0, 0.018, 0.329, 0.640, 1.562 max_d=1.562 avg_d=0.329 std_dev=0.311
C6 B 0, -0.007, 0.311, 0.629, 1.937 max_d=1.937 avg_d=0.311 std_dev=0.318
C6 A 0, -0.045, 0.305, 0.656, 1.907 max_d=1.907 avg_d=0.305 std_dev=0.350
O5' B 0, 0.265, 0.885, 1.504, 3.666 max_d=3.666 avg_d=0.885 std_dev=0.619
C1' A 0, -0.237, 0.468, 1.173, 3.242 max_d=3.242 avg_d=0.468 std_dev=0.705
O2 B 0, -0.175, 0.548, 1.271, 3.509 max_d=3.509 avg_d=0.548 std_dev=0.723
O2 A 0, -0.061, 0.668, 1.397, 3.732 max_d=3.732 avg_d=0.668 std_dev=0.729
O5' A 0, 0.450, 1.213, 1.976, 3.463 max_d=3.463 avg_d=1.213 std_dev=0.763
O4' B 0, -0.142, 0.635, 1.411, 4.079 max_d=4.079 avg_d=0.635 std_dev=0.777
C4 A 0, -0.323, 0.455, 1.232, 3.608 max_d=3.608 avg_d=0.455 std_dev=0.777
C5' A 0, 0.763, 1.548, 2.332, 3.910 max_d=3.910 avg_d=1.548 std_dev=0.785
C4 B 0, -0.239, 0.551, 1.340, 3.686 max_d=3.686 avg_d=0.551 std_dev=0.789
C5 B 0, -0.229, 0.574, 1.377, 3.820 max_d=3.820 avg_d=0.574 std_dev=0.803
C1' B 0, -0.317, 0.500, 1.317, 3.853 max_d=3.853 avg_d=0.500 std_dev=0.817
C5' B 0, 0.236, 1.059, 1.883, 4.463 max_d=4.463 avg_d=1.059 std_dev=0.824
C5 A 0, -0.319, 0.513, 1.345, 3.986 max_d=3.986 avg_d=0.513 std_dev=0.832
N4 A 0, -0.329, 0.527, 1.383, 5.259 max_d=5.259 avg_d=0.527 std_dev=0.856
P B 0, 0.104, 0.990, 1.876, 5.116 max_d=5.116 avg_d=0.990 std_dev=0.886
O4' A 0, 0.138, 1.030, 1.922, 4.136 max_d=4.136 avg_d=1.030 std_dev=0.892
C2' A 0, -0.109, 0.818, 1.746, 4.589 max_d=4.589 avg_d=0.818 std_dev=0.928
C4' A 0, 0.192, 1.207, 2.221, 4.519 max_d=4.519 avg_d=1.207 std_dev=1.015
C4' B 0, -0.153, 0.864, 1.881, 5.229 max_d=5.229 avg_d=0.864 std_dev=1.017
OP1 B 0, 0.225, 1.320, 2.415, 5.853 max_d=5.853 avg_d=1.320 std_dev=1.095
N4 B 0, -0.341, 0.760, 1.861, 5.859 max_d=5.859 avg_d=0.760 std_dev=1.101
P A 0, 0.223, 1.378, 2.533, 5.829 max_d=5.829 avg_d=1.378 std_dev=1.155
C3' A 0, 0.007, 1.203, 2.399, 5.282 max_d=5.282 avg_d=1.203 std_dev=1.196
C3' B 0, -0.307, 0.924, 2.155, 6.377 max_d=6.377 avg_d=0.924 std_dev=1.231
C2' B 0, -0.436, 0.813, 2.062, 5.909 max_d=5.909 avg_d=0.813 std_dev=1.249
OP2 B 0, -0.021, 1.271, 2.563, 7.396 max_d=7.396 avg_d=1.271 std_dev=1.292
OP1 A 0, 0.726, 2.080, 3.433, 7.326 max_d=7.326 avg_d=2.080 std_dev=1.353
O2' A 0, -0.162, 1.265, 2.692, 6.678 max_d=6.678 avg_d=1.265 std_dev=1.427
O2' B 0, -0.665, 1.131, 2.927, 8.236 max_d=8.236 avg_d=1.131 std_dev=1.796
O3' B 0, -0.516, 1.285, 3.086, 9.115 max_d=9.115 avg_d=1.285 std_dev=1.801
OP2 A 0, 0.309, 2.110, 3.912, 6.989 max_d=6.989 avg_d=2.110 std_dev=1.802
O3' A 0, -0.291, 1.694, 3.679, 7.864 max_d=7.864 avg_d=1.694 std_dev=1.985

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.02 0.01 0.02 0.04 0.01 0.02 0.15 0.02 0.01 0.03 0.02 0.04 0.02 0.33 0.01 0.29 0.86 0.51 0.34
C2 0.02 0.00 0.19 0.28 0.07 0.09 0.03 0.23 0.01 0.01 0.01 0.01 0.01 0.26 0.18 0.13 0.42 1.04 0.59 0.40
C2' 0.01 0.19 0.00 0.01 0.07 0.02 0.12 0.26 0.16 0.03 0.16 0.08 0.34 0.00 0.04 0.02 0.51 0.51 0.65 0.40
C3' 0.02 0.28 0.01 0.00 0.41 0.01 0.38 0.03 0.31 0.24 0.35 0.48 0.24 0.03 0.01 0.02 0.38 0.41 0.42 0.27
C4 0.04 0.07 0.07 0.41 0.00 0.17 0.01 0.33 0.02 0.04 0.02 0.00 0.05 0.34 0.22 0.05 0.49 1.12 0.90 0.51
C4' 0.01 0.09 0.02 0.01 0.17 0.00 0.20 0.01 0.19 0.09 0.11 0.18 0.12 0.31 0.03 0.01 0.02 0.48 0.37 0.20
C5 0.02 0.03 0.12 0.38 0.01 0.20 0.00 0.36 0.00 0.02 0.02 0.02 0.03 0.37 0.24 0.11 0.52 1.10 1.01 0.56
C5' 0.15 0.23 0.26 0.03 0.33 0.01 0.36 0.00 0.33 0.23 0.27 0.38 0.22 0.11 0.23 0.03 0.01 0.33 0.37 0.02
C6 0.02 0.01 0.16 0.31 0.02 0.19 0.00 0.33 0.00 0.01 0.04 0.02 0.02 0.33 0.16 0.15 0.48 1.05 0.85 0.50
N1 0.01 0.01 0.03 0.24 0.04 0.09 0.02 0.23 0.01 0.00 0.03 0.02 0.02 0.21 0.11 0.02 0.40 1.00 0.61 0.39
N3 0.03 0.01 0.16 0.35 0.02 0.11 0.02 0.27 0.04 0.03 0.00 0.01 0.01 0.31 0.16 0.10 0.48 1.09 0.73 0.46
N4 0.02 0.01 0.08 0.48 0.00 0.18 0.02 0.38 0.02 0.02 0.01 0.00 0.02 0.39 0.29 0.05 0.46 1.24 0.98 0.50
O2 0.04 0.01 0.34 0.24 0.05 0.12 0.03 0.22 0.02 0.02 0.01 0.02 0.00 0.31 0.32 0.22 0.38 1.02 0.50 0.40
O2' 0.02 0.26 0.00 0.03 0.34 0.31 0.37 0.11 0.33 0.21 0.31 0.39 0.31 0.00 0.08 0.22 0.42 0.65 0.70 0.45
O3' 0.33 0.18 0.04 0.01 0.22 0.03 0.24 0.23 0.16 0.11 0.16 0.29 0.32 0.08 0.00 0.27 0.30 0.51 0.37 0.32
O4' 0.01 0.13 0.02 0.02 0.05 0.01 0.11 0.03 0.15 0.02 0.10 0.05 0.22 0.22 0.27 0.00 0.29 0.96 0.61 0.49
O5' 0.29 0.42 0.51 0.38 0.49 0.02 0.52 0.01 0.48 0.40 0.48 0.46 0.38 0.42 0.30 0.29 0.00 0.02 0.02 0.01
OP1 0.86 1.04 0.51 0.41 1.12 0.48 1.10 0.33 1.05 1.00 1.09 1.24 1.02 0.65 0.51 0.96 0.02 0.00 0.02 0.01
OP2 0.51 0.59 0.65 0.42 0.90 0.37 1.01 0.37 0.85 0.61 0.73 0.98 0.50 0.70 0.37 0.61 0.02 0.02 0.00 0.01
P 0.34 0.40 0.40 0.27 0.51 0.20 0.56 0.02 0.50 0.39 0.46 0.50 0.40 0.45 0.32 0.49 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.36 0.46 0.47 0.35 1.43 0.38 1.49 0.42 0.99 0.49 0.91 1.61 0.36 1.01 0.52 0.38 0.87 1.12 1.77 1.22
C2 0.60 0.22 0.71 0.56 1.06 0.63 1.03 0.45 0.55 0.22 0.57 1.35 0.54 1.20 0.72 0.58 0.69 0.80 1.32 0.83
C2' 0.48 0.54 0.58 0.50 1.44 0.51 1.56 0.65 1.10 0.61 0.91 1.56 0.49 1.08 0.63 0.51 1.07 1.41 2.03 1.50
C3' 0.65 0.61 0.62 0.46 1.43 0.63 1.57 0.73 1.16 0.71 0.93 1.49 0.57 1.15 0.58 0.75 1.07 1.45 2.06 1.55
C4 1.62 1.04 1.72 1.51 0.32 1.61 0.30 1.29 0.65 1.08 0.54 0.60 1.46 2.20 1.67 1.56 1.07 0.88 0.72 0.72
C4' 0.71 0.74 0.73 0.58 1.48 0.68 1.55 0.66 1.13 0.76 1.04 1.63 0.70 1.21 0.72 0.76 0.95 1.24 1.82 1.33
C5 1.66 1.00 1.85 1.66 0.32 1.74 0.27 1.39 0.61 1.07 0.49 0.64 1.43 2.40 1.88 1.61 1.06 0.90 0.64 0.68
C5' 0.91 0.71 1.03 0.86 1.24 0.97 1.25 0.76 0.87 0.69 0.89 1.47 0.85 1.57 1.11 0.92 0.70 1.00 1.42 0.99
C6 1.19 0.57 1.41 1.22 0.63 1.29 0.56 0.95 0.25 0.61 0.29 0.97 1.02 1.99 1.48 1.15 0.67 0.65 0.83 0.47
N1 0.69 0.22 0.85 0.67 1.03 0.74 1.01 0.48 0.50 0.21 0.53 1.31 0.60 1.41 0.89 0.66 0.58 0.74 1.27 0.75
N3 1.07 0.56 1.14 0.96 0.60 1.05 0.54 0.79 0.29 0.58 0.30 0.95 0.98 1.60 1.10 1.03 0.75 0.68 0.94 0.60
N4 1.24 1.07 1.28 1.12 0.48 1.12 0.48 0.92 0.72 1.00 0.77 0.33 1.37 1.52 1.19 1.13 0.75 0.69 0.68 0.56
O2 0.32 0.53 0.38 0.50 1.49 0.41 1.50 0.58 1.02 0.56 0.98 1.71 0.32 0.70 0.52 0.37 1.05 1.19 1.78 1.27
O2' 0.80 0.94 0.71 0.84 1.80 0.88 1.99 1.18 1.57 1.07 1.27 1.85 0.70 0.92 0.75 0.92 1.59 1.92 2.56 2.04
O3' 1.28 1.28 1.06 1.04 1.92 1.24 2.14 1.43 1.84 1.43 1.47 1.85 1.12 1.28 0.89 1.45 1.76 2.06 2.66 2.21
O4' 0.66 0.68 0.73 0.59 1.46 0.65 1.47 0.54 1.02 0.67 1.01 1.66 0.66 1.21 0.75 0.66 0.82 1.01 1.61 1.10
O5' 1.15 0.81 1.39 1.23 1.00 1.27 0.94 0.97 0.65 0.76 0.80 1.22 1.10 1.96 1.56 1.10 0.66 0.81 1.03 0.67
OP1 1.61 1.27 1.95 1.87 1.29 1.84 1.17 1.59 1.06 1.24 1.23 1.62 1.51 2.44 2.23 1.56 1.20 1.24 1.04 0.99
OP2 1.69 1.15 2.00 1.94 0.86 1.98 0.76 1.74 0.85 1.17 0.91 1.03 1.48 2.54 2.32 1.69 1.27 1.26 0.77 0.93
P 1.42 0.91 1.74 1.66 0.83 1.69 0.75 1.43 0.65 0.92 0.75 1.12 1.23 2.28 2.04 1.41 0.99 1.07 0.78 0.74

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.00 0.01 0.02 0.01 0.02 0.03 0.02 0.01 0.02 0.02 0.04 0.02 0.08 0.01 0.13 0.33 0.28 0.14
C2 0.03 0.00 0.10 0.10 0.02 0.04 0.02 0.10 0.01 0.01 0.01 0.02 0.01 0.10 0.10 0.05 0.32 0.41 0.35 0.23
C2' 0.00 0.10 0.00 0.00 0.05 0.01 0.08 0.05 0.10 0.02 0.08 0.05 0.18 0.01 0.03 0.01 0.25 0.43 0.18 0.25
C3' 0.01 0.10 0.00 0.00 0.12 0.01 0.15 0.03 0.15 0.07 0.11 0.13 0.15 0.02 0.01 0.01 0.32 0.42 0.18 0.26
C4 0.02 0.02 0.05 0.12 0.00 0.09 0.01 0.18 0.01 0.02 0.01 0.01 0.02 0.11 0.10 0.03 0.45 0.47 0.49 0.34
C4' 0.01 0.04 0.01 0.01 0.09 0.00 0.12 0.01 0.11 0.05 0.05 0.09 0.07 0.08 0.02 0.01 0.02 0.19 0.29 0.05
C5 0.02 0.02 0.08 0.15 0.01 0.12 0.00 0.21 0.00 0.01 0.01 0.01 0.02 0.14 0.15 0.06 0.47 0.47 0.50 0.34
C5' 0.03 0.10 0.05 0.03 0.18 0.01 0.21 0.00 0.18 0.10 0.14 0.20 0.08 0.05 0.07 0.02 0.01 0.16 0.34 0.02
C6 0.02 0.01 0.10 0.15 0.01 0.11 0.00 0.18 0.00 0.01 0.01 0.01 0.02 0.13 0.14 0.07 0.40 0.42 0.40 0.26
N1 0.01 0.01 0.02 0.07 0.02 0.05 0.01 0.10 0.01 0.00 0.01 0.01 0.02 0.06 0.05 0.01 0.29 0.39 0.33 0.20
N3 0.02 0.01 0.08 0.11 0.01 0.05 0.01 0.14 0.01 0.01 0.00 0.01 0.02 0.10 0.10 0.04 0.39 0.45 0.42 0.29
N4 0.02 0.02 0.05 0.13 0.01 0.09 0.01 0.20 0.01 0.01 0.01 0.00 0.02 0.12 0.11 0.03 0.49 0.51 0.56 0.39
O2 0.04 0.01 0.18 0.15 0.02 0.07 0.02 0.08 0.02 0.02 0.02 0.02 0.00 0.18 0.19 0.09 0.26 0.40 0.31 0.19
O2' 0.02 0.10 0.01 0.02 0.11 0.08 0.14 0.05 0.13 0.06 0.10 0.12 0.18 0.00 0.06 0.07 0.11 0.38 0.23 0.20
O3' 0.08 0.10 0.03 0.01 0.10 0.02 0.15 0.07 0.14 0.05 0.10 0.11 0.19 0.06 0.00 0.05 0.26 0.49 0.30 0.30
O4' 0.01 0.05 0.01 0.01 0.03 0.01 0.06 0.02 0.07 0.01 0.04 0.03 0.09 0.07 0.05 0.00 0.11 0.26 0.40 0.19
O5' 0.13 0.32 0.25 0.32 0.45 0.02 0.47 0.01 0.40 0.29 0.39 0.49 0.26 0.11 0.26 0.11 0.00 0.02 0.02 0.01
OP1 0.33 0.41 0.43 0.42 0.47 0.19 0.47 0.16 0.42 0.39 0.45 0.51 0.40 0.38 0.49 0.26 0.02 0.00 0.01 0.01
OP2 0.28 0.35 0.18 0.18 0.49 0.29 0.50 0.34 0.40 0.33 0.42 0.56 0.31 0.23 0.30 0.40 0.02 0.01 0.00 0.01
P 0.14 0.23 0.25 0.26 0.34 0.05 0.34 0.02 0.26 0.20 0.29 0.39 0.19 0.20 0.30 0.19 0.01 0.01 0.01 0.00