ClaRNA

Doublet Group distance statistics: 43832

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Distances from reference structure (by RMSD)

31, 19, 2, 2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2, 42, 5, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C5 A 0, 0.013, 0.131, 0.249, 0.945 max_d=0.945 avg_d=0.131 std_dev=0.118
N1 A 0, 0.038, 0.264, 0.491, 0.669 max_d=0.669 avg_d=0.264 std_dev=0.227
N1 B 0, 0.034, 0.307, 0.580, 0.713 max_d=0.713 avg_d=0.307 std_dev=0.273
C6 A 0, 0.116, 0.553, 0.990, 1.113 max_d=1.113 avg_d=0.553 std_dev=0.437
C2 B 0, 0.043, 0.712, 1.380, 1.526 max_d=1.526 avg_d=0.712 std_dev=0.669
C2 A 0, 0.061, 0.769, 1.478, 1.625 max_d=1.625 avg_d=0.769 std_dev=0.708
C1' B 0, 0.038, 0.771, 1.503, 1.844 max_d=1.844 avg_d=0.771 std_dev=0.732
C4 B 0, 0.041, 0.788, 1.535, 1.659 max_d=1.659 avg_d=0.788 std_dev=0.747
C5 B 0, 0.056, 0.854, 1.653, 1.810 max_d=1.810 avg_d=0.854 std_dev=0.799
C1' A 0, 0.024, 0.851, 1.678, 2.190 max_d=2.190 avg_d=0.851 std_dev=0.827
C4 A 0, 0.047, 0.877, 1.707, 2.434 max_d=2.434 avg_d=0.877 std_dev=0.830
C6 B 0, 0.045, 0.950, 1.856, 2.016 max_d=2.016 avg_d=0.950 std_dev=0.906
O4' A 0, 0.021, 1.001, 1.980, 3.942 max_d=3.942 avg_d=1.001 std_dev=0.979
O2 A 0, 0.102, 1.118, 2.133, 2.353 max_d=2.353 avg_d=1.118 std_dev=1.015
N3 B 0, 0.035, 1.098, 2.162, 2.317 max_d=2.317 avg_d=1.098 std_dev=1.063
N3 A 0, 0.074, 1.245, 2.415, 2.629 max_d=2.629 avg_d=1.245 std_dev=1.170
O2 B 0, 0.063, 1.281, 2.499, 2.722 max_d=2.722 avg_d=1.281 std_dev=1.218
N4 B 0, 0.056, 1.281, 2.507, 2.689 max_d=2.689 avg_d=1.281 std_dev=1.225
N4 A 0, 0.081, 1.360, 2.638, 3.896 max_d=3.896 avg_d=1.360 std_dev=1.278
O4' B 0, 0.025, 1.641, 3.257, 3.937 max_d=3.937 avg_d=1.641 std_dev=1.616
C2' B 0, 0.007, 1.895, 3.783, 3.999 max_d=3.999 avg_d=1.895 std_dev=1.888
C2' A 0, 0.008, 1.897, 3.786, 4.103 max_d=4.103 avg_d=1.897 std_dev=1.889
C4' A 0, 0.019, 1.909, 3.799, 5.877 max_d=5.877 avg_d=1.909 std_dev=1.890
O2' B 0, 0.036, 2.089, 4.142, 4.376 max_d=4.376 avg_d=2.089 std_dev=2.053
O2' A 0, 0.007, 2.369, 4.732, 5.083 max_d=5.083 avg_d=2.369 std_dev=2.362
C3' A 0, 0.008, 2.432, 4.855, 5.955 max_d=5.955 avg_d=2.432 std_dev=2.424
C4' B 0, 0.018, 2.510, 5.001, 5.725 max_d=5.725 avg_d=2.510 std_dev=2.491
C3' B 0, 0.002, 2.521, 5.040, 5.492 max_d=5.492 avg_d=2.521 std_dev=2.519
O3' A 0, -0.011, 2.633, 5.276, 6.405 max_d=6.405 avg_d=2.633 std_dev=2.643
C5' A 0, 0.020, 2.766, 5.512, 7.126 max_d=7.126 avg_d=2.766 std_dev=2.746
O3' B 0, -0.014, 2.836, 5.685, 6.658 max_d=6.658 avg_d=2.836 std_dev=2.849
O5' A 0, 0.032, 3.064, 6.097, 6.410 max_d=6.410 avg_d=3.064 std_dev=3.032
O5' B 0, 0.040, 3.322, 6.604, 6.928 max_d=6.928 avg_d=3.322 std_dev=3.282
C5' B 0, 0.017, 3.436, 6.855, 7.472 max_d=7.472 avg_d=3.436 std_dev=3.419
P B 0, 0.040, 3.662, 7.285, 7.664 max_d=7.664 avg_d=3.662 std_dev=3.622
P A 0, -0.028, 3.955, 7.938, 8.479 max_d=8.479 avg_d=3.955 std_dev=3.983
OP2 B 0, 0.091, 4.135, 8.179, 8.690 max_d=8.690 avg_d=4.135 std_dev=4.044
OP2 A 0, -0.008, 4.543, 9.095, 9.843 max_d=9.843 avg_d=4.543 std_dev=4.552
OP1 B 0, 0.050, 4.715, 9.380, 9.807 max_d=9.807 avg_d=4.715 std_dev=4.665
OP1 A 0, -0.050, 4.803, 9.656, 10.239 max_d=10.239 avg_d=4.803 std_dev=4.853

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.01 0.00 0.02 0.01 0.01 0.01 0.07 0.01 0.00 0.01 0.02 0.03 0.01 0.08 0.00 0.13 0.67 0.25 0.18
C2 0.01 0.00 0.28 0.25 0.01 0.25 0.00 0.38 0.00 0.01 0.01 0.01 0.00 0.14 0.09 0.19 0.55 0.50 1.35 0.59
C2' 0.00 0.28 0.00 0.00 0.06 0.01 0.17 0.07 0.26 0.02 0.23 0.09 0.48 0.00 0.03 0.03 0.13 0.40 0.31 0.16
C3' 0.02 0.25 0.00 0.00 0.03 0.01 0.24 0.02 0.29 0.03 0.19 0.04 0.49 0.02 0.01 0.01 0.05 0.10 0.08 0.06
C4 0.01 0.01 0.06 0.03 0.00 0.14 0.00 0.38 0.01 0.01 0.00 0.00 0.01 0.25 0.14 0.08 0.47 1.86 0.38 0.70
C4' 0.01 0.25 0.01 0.01 0.14 0.00 0.39 0.01 0.43 0.07 0.14 0.15 0.58 0.02 0.02 0.01 0.01 0.10 0.19 0.02
C5 0.01 0.00 0.17 0.24 0.00 0.39 0.00 0.88 0.00 0.01 0.00 0.01 0.01 0.19 0.14 0.24 1.13 2.69 0.83 1.54
C5' 0.07 0.38 0.07 0.02 0.38 0.01 0.88 0.00 0.90 0.22 0.21 0.43 1.01 0.06 0.04 0.02 0.01 0.13 0.41 0.02
C6 0.01 0.00 0.26 0.29 0.01 0.43 0.00 0.90 0.00 0.00 0.01 0.01 0.01 0.11 0.12 0.27 1.19 2.43 0.87 1.48
N1 0.00 0.01 0.02 0.03 0.01 0.07 0.01 0.22 0.00 0.00 0.01 0.01 0.01 0.09 0.09 0.03 0.31 1.21 0.31 0.41
N3 0.01 0.01 0.23 0.19 0.00 0.14 0.00 0.21 0.01 0.01 0.00 0.01 0.01 0.22 0.12 0.10 0.35 0.90 1.22 0.38
N4 0.02 0.01 0.09 0.04 0.00 0.15 0.01 0.43 0.01 0.01 0.01 0.00 0.02 0.31 0.17 0.10 0.50 2.02 0.41 0.78
O2 0.03 0.00 0.48 0.49 0.01 0.58 0.01 1.01 0.01 0.01 0.01 0.02 0.00 0.12 0.10 0.40 1.38 0.75 2.37 1.58
O2' 0.01 0.14 0.00 0.02 0.25 0.02 0.19 0.06 0.11 0.09 0.22 0.31 0.12 0.00 0.04 0.01 0.14 0.39 0.42 0.18
O3' 0.08 0.09 0.03 0.01 0.14 0.02 0.14 0.04 0.12 0.09 0.12 0.17 0.10 0.04 0.00 0.04 0.04 0.13 0.13 0.05
O4' 0.00 0.19 0.03 0.01 0.08 0.01 0.24 0.02 0.27 0.03 0.10 0.10 0.40 0.01 0.04 0.00 0.06 0.47 0.14 0.07
O5' 0.13 0.55 0.13 0.05 0.47 0.01 1.13 0.01 1.19 0.31 0.35 0.50 1.38 0.14 0.04 0.06 0.00 0.02 0.01 0.00
OP1 0.67 0.50 0.40 0.10 1.86 0.10 2.69 0.13 2.43 1.21 0.90 2.02 0.75 0.39 0.13 0.47 0.02 0.00 0.01 0.01
OP2 0.25 1.35 0.31 0.08 0.38 0.19 0.83 0.41 0.87 0.31 1.22 0.41 2.37 0.42 0.13 0.14 0.01 0.01 0.00 0.01
P 0.18 0.59 0.16 0.06 0.70 0.02 1.54 0.02 1.48 0.41 0.38 0.78 1.58 0.18 0.05 0.07 0.00 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.15 1.32 0.69 0.98 1.53 1.29 0.56 2.11 0.16 0.48 1.83 2.08 1.53 0.51 1.02 0.60 2.21 4.02 2.24 2.67
C2 1.26 0.11 1.73 2.08 0.16 2.49 1.17 3.34 1.54 0.93 0.46 0.46 0.43 1.42 2.13 1.93 3.55 5.13 3.27 3.85
C2' 0.59 2.01 0.22 0.41 2.31 0.83 1.25 1.66 0.70 1.11 2.60 2.95 2.21 0.28 0.44 0.26 1.63 3.38 1.61 2.06
C3' 0.72 2.10 0.28 0.41 2.54 0.74 1.58 1.47 0.98 1.27 2.71 3.24 2.22 0.32 0.43 0.38 1.40 3.15 1.43 1.84
C4 1.48 0.22 1.86 2.42 0.31 2.92 1.32 3.82 1.73 1.13 0.29 0.25 0.34 1.38 2.53 2.31 3.91 4.93 3.64 4.00
C4' 0.57 1.38 1.06 1.36 1.85 1.58 1.01 2.31 0.60 0.71 1.98 2.51 1.48 0.97 1.40 0.89 2.27 4.01 2.49 2.77
C5 0.68 0.72 1.21 1.83 0.69 2.24 0.33 3.19 0.76 0.27 1.13 1.10 1.05 0.75 1.95 1.46 3.20 4.33 3.26 3.41
C5' 1.12 1.17 1.71 2.12 1.64 2.37 0.94 3.12 0.88 0.83 1.75 2.35 1.23 1.60 2.19 1.59 2.96 4.52 3.27 3.42
C6 0.27 1.15 0.86 1.38 1.23 1.72 0.28 2.65 0.26 0.28 1.60 1.67 1.41 0.51 1.48 0.93 2.70 4.13 2.85 3.04
N1 0.52 0.84 1.11 1.50 0.92 1.86 0.19 2.74 0.60 0.14 1.31 1.42 1.13 0.82 1.56 1.17 2.88 4.53 2.85 3.25
N3 1.73 0.50 2.09 2.51 0.67 2.99 1.76 3.83 2.11 1.45 0.16 0.27 0.17 1.69 2.59 2.48 4.03 5.30 3.63 4.18
N4 1.95 0.69 2.18 2.82 0.83 3.39 1.82 4.21 2.22 1.63 0.34 0.44 0.31 1.63 2.98 2.86 4.22 4.91 3.85 4.16
O2 1.44 0.29 1.89 2.13 0.43 2.53 1.48 3.31 1.80 1.17 0.20 0.24 0.20 1.65 2.16 2.04 3.56 5.26 3.19 3.89
O2' 1.44 2.79 1.03 0.74 2.98 0.45 1.90 0.87 1.43 1.90 3.33 3.55 3.01 1.17 0.72 0.79 0.85 2.57 0.69 1.22
O3' 1.34 2.58 0.70 0.56 3.01 0.39 2.16 0.60 1.60 1.86 3.13 3.63 2.67 0.73 0.56 0.91 0.57 2.32 0.50 0.98
O4' 0.73 0.90 1.43 1.75 1.24 1.94 0.54 2.73 0.63 0.45 1.44 1.83 1.04 1.27 1.78 1.18 2.81 4.63 3.04 3.34
O5' 1.13 1.11 1.64 2.15 1.56 2.54 0.77 3.36 0.83 0.75 1.73 2.31 1.22 1.48 2.24 1.74 3.14 4.62 3.37 3.53
OP1 2.84 1.27 3.38 4.01 0.89 4.47 1.36 5.24 2.15 2.04 0.95 1.28 1.27 3.22 4.18 3.58 4.79 5.85 4.90 5.00
OP2 1.41 1.23 1.91 2.62 1.67 3.04 0.88 3.90 1.01 0.92 1.88 2.47 1.36 1.74 2.78 2.12 3.57 4.93 4.08 4.04
P 1.78 0.93 2.31 2.94 1.23 3.37 0.82 4.19 1.30 1.15 1.37 1.95 0.99 2.13 3.10 2.50 3.85 5.13 4.13 4.19

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.02 0.00 0.01 0.01 0.01 0.01 0.07 0.01 0.01 0.02 0.01 0.02 0.02 0.37 0.01 0.19 0.33 0.28 0.35
C2 0.02 0.00 0.14 0.24 0.00 0.06 0.01 0.05 0.01 0.01 0.00 0.01 0.00 0.26 0.22 0.07 0.12 0.47 0.49 0.20
C2' 0.00 0.14 0.00 0.00 0.04 0.01 0.09 0.21 0.12 0.02 0.11 0.05 0.25 0.00 0.02 0.02 0.42 0.56 0.75 0.80
C3' 0.01 0.24 0.00 0.00 0.41 0.01 0.43 0.02 0.37 0.25 0.33 0.44 0.13 0.01 0.01 0.02 0.15 0.24 0.48 0.24
C4 0.01 0.00 0.04 0.41 0.00 0.15 0.00 0.15 0.00 0.01 0.00 0.00 0.01 0.41 0.13 0.03 0.20 0.61 1.04 0.26
C4' 0.01 0.06 0.01 0.01 0.15 0.00 0.19 0.01 0.18 0.09 0.10 0.16 0.05 0.33 0.03 0.01 0.01 0.25 0.44 0.12
C5 0.01 0.01 0.09 0.43 0.00 0.19 0.00 0.19 0.00 0.00 0.01 0.01 0.01 0.41 0.23 0.05 0.23 0.63 1.08 0.29
C5' 0.07 0.05 0.21 0.02 0.15 0.01 0.19 0.00 0.16 0.06 0.09 0.17 0.06 0.12 0.25 0.02 0.01 0.38 0.49 0.01
C6 0.01 0.01 0.12 0.37 0.00 0.18 0.00 0.16 0.00 0.00 0.01 0.01 0.01 0.33 0.16 0.07 0.17 0.55 0.71 0.20
N1 0.01 0.01 0.02 0.25 0.01 0.09 0.00 0.06 0.00 0.00 0.01 0.01 0.01 0.24 0.11 0.02 0.13 0.46 0.40 0.21
N3 0.02 0.00 0.11 0.33 0.00 0.10 0.01 0.09 0.01 0.01 0.00 0.01 0.01 0.35 0.11 0.06 0.15 0.55 0.78 0.19
N4 0.01 0.01 0.05 0.44 0.00 0.16 0.01 0.17 0.01 0.01 0.01 0.00 0.01 0.45 0.19 0.03 0.24 0.66 1.25 0.33
O2 0.02 0.00 0.25 0.13 0.01 0.05 0.01 0.06 0.01 0.01 0.01 0.01 0.00 0.14 0.43 0.11 0.12 0.41 0.31 0.25
O2' 0.02 0.26 0.00 0.01 0.41 0.33 0.41 0.12 0.33 0.24 0.35 0.45 0.14 0.00 0.03 0.22 0.27 0.44 0.81 0.75
O3' 0.37 0.22 0.02 0.01 0.13 0.03 0.23 0.25 0.16 0.11 0.11 0.19 0.43 0.03 0.00 0.26 0.37 0.79 0.28 0.18
O4' 0.01 0.07 0.02 0.02 0.03 0.01 0.05 0.02 0.07 0.02 0.06 0.03 0.11 0.22 0.26 0.00 0.10 0.12 0.26 0.18
O5' 0.19 0.12 0.42 0.15 0.20 0.01 0.23 0.01 0.17 0.13 0.15 0.24 0.12 0.27 0.37 0.10 0.00 0.02 0.02 0.00
OP1 0.33 0.47 0.56 0.24 0.61 0.25 0.63 0.38 0.55 0.46 0.55 0.66 0.41 0.44 0.79 0.12 0.02 0.00 0.01 0.00
OP2 0.28 0.49 0.75 0.48 1.04 0.44 1.08 0.49 0.71 0.40 0.78 1.25 0.31 0.81 0.28 0.26 0.02 0.01 0.00 0.01
P 0.35 0.20 0.80 0.24 0.26 0.12 0.29 0.01 0.20 0.21 0.19 0.33 0.25 0.75 0.18 0.18 0.00 0.00 0.01 0.00