ClaRNA

Doublet Group distance statistics: 43843

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Distances from reference structure (by RMSD)

39, 20, 1, 0, 0, 0, 4, 20, 14, 5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C4 A 0, 0.031, 0.154, 0.277, 0.405 max_d=0.405 avg_d=0.154 std_dev=0.123
C1' A 0, 0.053, 0.215, 0.377, 0.576 max_d=0.576 avg_d=0.215 std_dev=0.162
N1 A 0, 0.018, 0.196, 0.375, 0.704 max_d=0.704 avg_d=0.196 std_dev=0.178
N3 A 0, 0.030, 0.235, 0.440, 0.705 max_d=0.705 avg_d=0.235 std_dev=0.205
N1 B 0, 0.008, 0.240, 0.473, 0.752 max_d=0.752 avg_d=0.240 std_dev=0.232
N9 A 0, 0.007, 0.268, 0.528, 0.792 max_d=0.792 avg_d=0.268 std_dev=0.261
C2 A 0, 0.013, 0.282, 0.551, 0.809 max_d=0.809 avg_d=0.282 std_dev=0.269
C2 B 0, 0.008, 0.316, 0.623, 1.012 max_d=1.012 avg_d=0.316 std_dev=0.308
C6 A 0, 0.005, 0.337, 0.669, 1.009 max_d=1.009 avg_d=0.337 std_dev=0.332
C5 A 0, -0.005, 0.373, 0.751, 1.223 max_d=1.223 avg_d=0.373 std_dev=0.378
C4 B 0, 0.038, 0.471, 0.903, 1.119 max_d=1.119 avg_d=0.471 std_dev=0.433
N3 B 0, -0.010, 0.424, 0.858, 1.301 max_d=1.301 avg_d=0.424 std_dev=0.434
C6 B 0, 0.011, 0.479, 0.947, 1.431 max_d=1.431 avg_d=0.479 std_dev=0.468
C5 B 0, 0.037, 0.559, 1.081, 1.576 max_d=1.576 avg_d=0.559 std_dev=0.522
N6 A 0, 0.016, 0.559, 1.102, 1.741 max_d=1.741 avg_d=0.559 std_dev=0.543
C1' B 0, -0.001, 0.567, 1.134, 1.531 max_d=1.531 avg_d=0.567 std_dev=0.567
C8 A 0, -0.054, 0.544, 1.143, 1.863 max_d=1.863 avg_d=0.544 std_dev=0.598
O2 B 0, 0.057, 0.684, 1.311, 2.059 max_d=2.059 avg_d=0.684 std_dev=0.627
N7 A 0, -0.046, 0.627, 1.300, 2.160 max_d=2.160 avg_d=0.627 std_dev=0.673
N4 B 0, 0.058, 0.800, 1.542, 1.985 max_d=1.985 avg_d=0.800 std_dev=0.742
O4' B 0, 0.011, 0.796, 1.581, 2.178 max_d=2.178 avg_d=0.796 std_dev=0.785
C2' A 0, -0.118, 0.785, 1.688, 2.489 max_d=2.489 avg_d=0.785 std_dev=0.903
O4' A 0, -0.205, 0.818, 1.840, 2.795 max_d=2.795 avg_d=0.818 std_dev=1.022
C2' B 0, -0.113, 0.924, 1.961, 2.939 max_d=2.939 avg_d=0.924 std_dev=1.037
C3' A 0, -0.111, 1.111, 2.333, 3.099 max_d=3.099 avg_d=1.111 std_dev=1.222
C4' A 0, -0.217, 1.023, 2.263, 3.374 max_d=3.374 avg_d=1.023 std_dev=1.240
C4' B 0, -0.093, 1.169, 2.430, 3.425 max_d=3.425 avg_d=1.169 std_dev=1.261
O2' B 0, -0.069, 1.207, 2.484, 3.485 max_d=3.485 avg_d=1.207 std_dev=1.276
C3' B 0, -0.161, 1.141, 2.443, 3.739 max_d=3.739 avg_d=1.141 std_dev=1.302
O5' B 0, -0.075, 1.322, 2.720, 4.270 max_d=4.270 avg_d=1.322 std_dev=1.397
O3' A 0, -0.091, 1.369, 2.828, 3.566 max_d=3.566 avg_d=1.369 std_dev=1.460
O2' A 0, -0.129, 1.399, 2.927, 3.946 max_d=3.946 avg_d=1.399 std_dev=1.528
OP2 B 0, -0.259, 1.286, 2.830, 4.632 max_d=4.632 avg_d=1.286 std_dev=1.544
C5' B 0, -0.078, 1.474, 3.025, 4.373 max_d=4.373 avg_d=1.474 std_dev=1.552
P B 0, -0.268, 1.414, 3.096, 5.005 max_d=5.005 avg_d=1.414 std_dev=1.682
O3' B 0, -0.196, 1.542, 3.281, 5.021 max_d=5.021 avg_d=1.542 std_dev=1.739
OP1 B 0, -0.296, 1.743, 3.781, 5.989 max_d=5.989 avg_d=1.743 std_dev=2.038
C5' A 0, -0.458, 1.866, 4.189, 6.137 max_d=6.137 avg_d=1.866 std_dev=2.323
O5' A 0, -0.376, 2.638, 5.653, 7.480 max_d=7.480 avg_d=2.638 std_dev=3.015
P A 0, -0.689, 3.331, 7.350, 10.362 max_d=10.362 avg_d=3.331 std_dev=4.020
OP2 A 0, -0.950, 3.481, 7.913, 11.698 max_d=11.698 avg_d=3.481 std_dev=4.432
OP1 A 0, -0.592, 4.185, 8.963, 11.750 max_d=11.750 avg_d=4.185 std_dev=4.778

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.00 0.01 0.02 0.01 0.01 0.04 0.02 0.02 0.02 0.03 0.02 0.01 0.01 0.02 0.29 0.01 0.41 0.44 0.51 0.37
C2 0.03 0.00 0.43 0.69 0.01 0.55 0.01 0.91 0.01 0.01 0.00 0.00 0.01 0.01 0.01 0.37 0.76 0.31 0.43 0.49 0.56 0.40
C2' 0.00 0.43 0.00 0.01 0.22 0.01 0.11 0.16 0.20 0.20 0.34 0.43 0.15 0.11 0.03 0.00 0.02 0.03 0.25 0.21 0.33 0.16
C3' 0.01 0.69 0.01 0.00 0.31 0.01 0.27 0.02 0.32 0.60 0.51 0.68 0.31 0.50 0.22 0.02 0.01 0.02 0.31 0.39 0.27 0.19
C4 0.02 0.01 0.22 0.31 0.00 0.22 0.00 0.31 0.01 0.01 0.01 0.00 0.02 0.00 0.00 0.34 0.29 0.16 0.53 0.63 0.83 0.64
C4' 0.01 0.55 0.01 0.01 0.22 0.00 0.09 0.01 0.17 0.43 0.38 0.55 0.11 0.33 0.10 0.30 0.02 0.01 0.01 0.11 0.42 0.13
C5 0.01 0.01 0.11 0.27 0.00 0.09 0.00 0.14 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.42 0.11 0.06 0.95 1.14 1.46 1.16
C5' 0.04 0.91 0.16 0.02 0.31 0.01 0.14 0.00 0.25 0.68 0.63 0.86 0.16 0.56 0.15 0.14 0.21 0.02 0.01 0.31 0.34 0.02
C6 0.02 0.01 0.20 0.32 0.01 0.17 0.01 0.25 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.47 0.28 0.12 0.76 0.99 1.34 1.02
C8 0.02 0.01 0.20 0.60 0.01 0.43 0.01 0.68 0.01 0.00 0.01 0.01 0.02 0.00 0.01 0.32 0.43 0.18 1.53 1.64 1.90 1.63
N1 0.02 0.00 0.34 0.51 0.01 0.38 0.01 0.63 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.44 0.56 0.23 0.41 0.57 0.83 0.56
N3 0.03 0.00 0.43 0.68 0.00 0.55 0.01 0.86 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.31 0.70 0.33 0.39 0.43 0.45 0.36
N6 0.02 0.01 0.15 0.31 0.02 0.11 0.01 0.16 0.01 0.02 0.01 0.01 0.00 0.02 0.02 0.50 0.20 0.07 1.00 1.33 1.73 1.34
N7 0.01 0.01 0.11 0.50 0.00 0.33 0.00 0.56 0.01 0.00 0.01 0.01 0.02 0.00 0.01 0.41 0.32 0.11 1.50 1.74 2.12 1.75
N9 0.01 0.01 0.03 0.22 0.00 0.10 0.01 0.15 0.01 0.01 0.01 0.01 0.02 0.01 0.00 0.25 0.10 0.02 0.84 0.88 1.03 0.87
O2' 0.02 0.37 0.00 0.02 0.34 0.30 0.42 0.14 0.47 0.32 0.44 0.31 0.50 0.41 0.25 0.00 0.05 0.21 0.18 0.23 0.70 0.24
O3' 0.29 0.76 0.02 0.01 0.29 0.02 0.11 0.21 0.28 0.43 0.56 0.70 0.20 0.32 0.10 0.05 0.00 0.16 0.26 0.43 0.54 0.14
O4' 0.01 0.31 0.03 0.02 0.16 0.01 0.06 0.02 0.12 0.18 0.23 0.33 0.07 0.11 0.02 0.21 0.16 0.00 0.44 0.51 0.35 0.32
O5' 0.41 0.43 0.25 0.31 0.53 0.01 0.95 0.01 0.76 1.53 0.41 0.39 1.00 1.50 0.84 0.18 0.26 0.44 0.00 0.01 0.02 0.01
OP1 0.44 0.49 0.21 0.39 0.63 0.11 1.14 0.31 0.99 1.64 0.57 0.43 1.33 1.74 0.88 0.23 0.43 0.51 0.01 0.00 0.01 0.01
OP2 0.51 0.56 0.33 0.27 0.83 0.42 1.46 0.34 1.34 1.90 0.83 0.45 1.73 2.12 1.03 0.70 0.54 0.35 0.02 0.01 0.00 0.01
P 0.37 0.40 0.16 0.19 0.64 0.13 1.16 0.02 1.02 1.63 0.56 0.36 1.34 1.75 0.87 0.24 0.14 0.32 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.67 0.11 0.92 1.24 0.33 1.25 0.14 1.46 0.41 0.39 0.26 0.70 0.13 0.97 1.51 0.90 1.20 1.65 1.27 1.29
C2 0.59 0.28 0.83 1.20 0.41 1.22 0.20 1.49 0.43 0.36 0.47 0.73 0.32 0.83 1.45 0.84 1.40 2.09 1.60 1.66
C2' 0.58 0.47 0.83 1.09 0.60 1.00 0.45 1.17 0.47 0.47 0.58 0.84 0.47 0.81 1.33 0.68 1.16 1.60 1.37 1.30
C3' 0.26 0.82 0.17 0.46 1.18 0.48 0.85 0.78 0.51 0.53 1.12 1.53 0.80 0.16 0.74 0.13 0.51 0.98 0.78 0.72
C4 0.71 0.13 0.98 1.34 0.32 1.36 0.14 1.61 0.46 0.41 0.30 0.70 0.15 1.03 1.63 0.97 1.41 2.02 1.52 1.59
C4' 0.67 0.49 0.79 1.17 0.79 1.36 0.40 1.70 0.43 0.44 0.76 1.25 0.51 0.90 1.43 0.98 1.21 1.53 1.30 1.37
C5 0.85 0.20 1.14 1.50 0.27 1.53 0.19 1.77 0.55 0.52 0.24 0.67 0.22 1.21 1.81 1.12 1.54 2.15 1.56 1.69
C5' 1.03 0.91 1.11 1.50 1.15 1.78 0.69 2.17 0.71 0.79 1.17 1.65 0.97 1.28 1.80 1.35 1.73 2.10 1.72 1.95
C6 0.82 0.19 1.10 1.47 0.29 1.51 0.19 1.76 0.54 0.50 0.29 0.67 0.21 1.16 1.79 1.10 1.56 2.22 1.61 1.74
C8 0.98 0.31 1.26 1.60 0.25 1.64 0.25 1.84 0.61 0.63 0.17 0.64 0.36 1.37 1.93 1.24 1.56 2.02 1.45 1.61
N1 0.69 0.23 0.96 1.33 0.36 1.36 0.20 1.63 0.49 0.42 0.40 0.70 0.26 0.98 1.61 0.96 1.49 2.19 1.63 1.73
N3 0.56 0.23 0.81 1.17 0.40 1.18 0.16 1.44 0.39 0.32 0.44 0.74 0.26 0.81 1.42 0.81 1.33 1.98 1.54 1.58
N6 0.92 0.24 1.21 1.59 0.26 1.63 0.23 1.87 0.60 0.57 0.25 0.65 0.26 1.30 1.92 1.20 1.65 2.30 1.63 1.80
N7 1.01 0.31 1.30 1.65 0.24 1.69 0.25 1.90 0.63 0.65 0.17 0.64 0.36 1.41 1.99 1.28 1.63 2.15 1.52 1.70
N9 0.79 0.16 1.06 1.39 0.29 1.42 0.16 1.64 0.49 0.47 0.23 0.68 0.19 1.12 1.69 1.03 1.39 1.91 1.42 1.50
O2' 0.94 0.67 1.23 1.42 0.45 1.22 0.58 1.27 0.78 0.80 0.51 0.29 0.70 1.19 1.62 0.97 1.41 1.66 1.59 1.45
O3' 0.48 0.89 0.31 0.30 1.22 0.28 1.04 0.47 0.76 0.71 1.12 1.50 0.83 0.25 0.50 0.34 0.30 0.53 0.43 0.36
O4' 0.97 0.46 1.09 1.43 0.52 1.60 0.46 1.88 0.73 0.68 0.50 0.89 0.46 1.20 1.67 1.28 1.38 1.64 1.36 1.44
O5' 1.25 1.90 1.01 0.96 2.27 1.30 1.64 1.59 1.28 1.45 2.31 2.83 1.96 1.14 1.12 1.21 1.17 1.56 1.04 1.38
OP1 2.10 2.96 1.82 1.57 3.32 1.90 2.48 2.07 2.08 2.35 3.46 3.97 3.06 1.96 1.62 1.93 1.81 2.25 1.39 1.99
OP2 0.46 1.62 0.25 0.62 2.12 1.02 1.31 1.51 0.72 0.91 2.20 2.80 1.70 0.37 1.04 0.53 1.20 1.94 1.20 1.56
P 1.31 2.09 1.08 1.03 2.51 1.45 1.73 1.77 1.31 1.52 2.59 3.17 2.17 1.24 1.22 1.29 1.39 1.86 1.09 1.62

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.01 0.00 0.01 0.02 0.01 0.02 0.04 0.02 0.01 0.01 0.02 0.02 0.02 0.02 0.01 0.38 0.34 0.24 0.35
C2 0.01 0.00 0.07 0.10 0.02 0.06 0.01 0.13 0.01 0.01 0.01 0.01 0.01 0.06 0.11 0.02 0.54 0.43 0.47 0.52
C2' 0.00 0.07 0.00 0.00 0.05 0.01 0.06 0.02 0.07 0.02 0.06 0.05 0.12 0.00 0.02 0.01 0.18 0.15 0.13 0.14
C3' 0.01 0.10 0.00 0.00 0.08 0.00 0.07 0.02 0.08 0.04 0.11 0.08 0.15 0.02 0.01 0.01 0.08 0.15 0.18 0.07
C4 0.02 0.02 0.05 0.08 0.00 0.09 0.01 0.21 0.01 0.02 0.01 0.00 0.02 0.05 0.08 0.04 0.73 0.67 0.73 0.76
C4' 0.01 0.06 0.01 0.00 0.09 0.00 0.09 0.01 0.08 0.05 0.08 0.10 0.06 0.04 0.02 0.00 0.02 0.17 0.22 0.04
C5 0.02 0.01 0.06 0.07 0.01 0.09 0.00 0.21 0.01 0.01 0.01 0.01 0.01 0.05 0.08 0.05 0.82 0.79 0.79 0.85
C5' 0.04 0.13 0.02 0.02 0.21 0.01 0.21 0.00 0.17 0.12 0.17 0.21 0.10 0.04 0.03 0.02 0.01 0.32 0.34 0.01
C6 0.02 0.01 0.07 0.08 0.01 0.08 0.01 0.17 0.00 0.01 0.02 0.01 0.01 0.04 0.09 0.04 0.78 0.71 0.62 0.75
N1 0.01 0.01 0.02 0.04 0.02 0.05 0.01 0.12 0.01 0.00 0.01 0.01 0.01 0.03 0.04 0.02 0.58 0.49 0.44 0.54
N3 0.01 0.01 0.06 0.11 0.01 0.08 0.01 0.17 0.02 0.01 0.00 0.01 0.01 0.07 0.11 0.03 0.63 0.52 0.59 0.62
N4 0.02 0.01 0.05 0.08 0.00 0.10 0.01 0.21 0.01 0.01 0.01 0.00 0.02 0.06 0.10 0.04 0.76 0.72 0.81 0.81
O2 0.02 0.01 0.12 0.15 0.02 0.06 0.01 0.10 0.01 0.01 0.01 0.02 0.00 0.10 0.16 0.03 0.42 0.30 0.37 0.40
O2' 0.02 0.06 0.00 0.02 0.05 0.04 0.05 0.04 0.04 0.03 0.07 0.06 0.10 0.00 0.04 0.06 0.06 0.12 0.15 0.07
O3' 0.02 0.11 0.02 0.01 0.08 0.02 0.08 0.03 0.09 0.04 0.11 0.10 0.16 0.04 0.00 0.02 0.30 0.36 0.39 0.33
O4' 0.01 0.02 0.01 0.01 0.04 0.00 0.05 0.02 0.04 0.02 0.03 0.04 0.03 0.06 0.02 0.00 0.33 0.39 0.18 0.34
O5' 0.38 0.54 0.18 0.08 0.73 0.02 0.82 0.01 0.78 0.58 0.63 0.76 0.42 0.06 0.30 0.33 0.00 0.02 0.02 0.00
OP1 0.34 0.43 0.15 0.15 0.67 0.17 0.79 0.32 0.71 0.49 0.52 0.72 0.30 0.12 0.36 0.39 0.02 0.00 0.02 0.01
OP2 0.24 0.47 0.13 0.18 0.73 0.22 0.79 0.34 0.62 0.44 0.59 0.81 0.37 0.15 0.39 0.18 0.02 0.02 0.00 0.01
P 0.35 0.52 0.14 0.07 0.76 0.04 0.85 0.01 0.75 0.54 0.62 0.81 0.40 0.07 0.33 0.34 0.00 0.01 0.01 0.00