ClaRNA

Doublet Group info: classifier/previously-uncategorized/neighbours-0002/Pu-Py

distance statistics     members distance graph (clans)     superimpose     cluster

Details

N. type: None
Program used: None
Category: classifier
SubCategory: previously-uncategorized
Desc: neighbours-0002/Pu-Py
Members:
count: 1295
download members
2OJ3:B37:B38
3F1H:A1452:A1453
3F1F:A1452:A1453
2OIU:P49:P50
2ZJR:X1349:X1350
3AKZ:F12:F13
2CT8:C12:C13
2ZJR:X805:X806
3F1G:A159:A160
2OIH:B37:B38
3U5F:61737:61738
3G9C:Q133:Q134
3U5B:2226:2227
3U5D:1843:1844
3KNI:A1048:A1049
3U5F:61678:61679
3U5B:21725:21726
3U5B:21419:21420
3AMT:B12:B13
364D:C5:C6
2OIU:Q49:Q50
3KFU:M12:M13
3KFU:N12:N13
3U5H:51622:51623
3KNI:A2666:A2667
1F7V:B12:B13
3U5B:2166:2167
3U5H:5849:5850
3OHC:A159:A160
3KNK:A1306:A1307
3F1F:A787:A788
3R8S:A2640:A2641
1VC7:B38:B39
3OGE:A159:A160
3KNI:A122:A123
3U5H:5146:5147
3EPH:F11:F12
1Q82:A1416:A1417
4TNA:A12:A13
1TRA:A12:A13
3OHZ:A1519:A1520
1K8A:A1416:A1417
1KD1:A1416:A1417
3KNK:A1518:A1519
3R8T:A2639:A2640
1FFK:01369:01370
1YJ9:01673:01674
3KNK:A1653:A1654
2J00:A967:A968
1GAX:C12:C13
2J02:A967:A968
1IVS:C12:C13
3KNK:A1387:A1388
3KNI:A1307:A1308
3OHK:A1301:A1302
3OI1:A122:A123
3OHJ:A1301:A1302
3CCR:01673:01674
1EVV:A12:A13
1QU3:T12:T13
3CCJ:01269:01270
1YI2:01416:01417
2OTL:01269:01270
1Q81:A1470:A1471
1M90:A2291:A2292
3R8T:A1912:A1913
3KNH:A456:A457
1VQ6:02177:02178
1YJN:02225:02226
3OHY:A574:A575
1Q86:A2291:A2292
1K8A:A2291:A2292
3KNI:A1318:A1319
364D:A7:A8
1S72:01603:01604
1NJI:A1603:A1604
3OI1:A1961:A1962
2QEX:02225:02226
3CCU:01603:01604
2VQF:A574:A575
1N32:A574:A575
2QA4:01602:01603
3CME:0334:0335
3CC2:02225:02226
3CCV:01603:01604
3D2V:B19:B20
1YJN:0639:0640
2J01:A187:A188
3F1H:A2155:A2156
3CD6:01603:01604
1YHQ:02225:02226
2UUB:A574:A575
3R8O:A328:A329
1YJW:01603:01604
2UUB:A972:A973
1YI2:02225:02226
3OI0:A1033:A1034
2QA4:01259:01260
3R8T:A736:A737
2UXC:A574:A575
3R8T:A1023:A1024
3R8T:A2664:A2665
3D2G:B19:B20
3CCM:02177:02178
1FFK:02178:02179
3OHK:A2452:A2453
1VQ9:01603:01604
3OLB:N15:N16
1M90:A639:A640
3OL7:B14:B15
3OHJ:A2452:A2453
3CME:0202:0203
3OL7:F14:F15
1Q81:A1603:A1604
3U5D:12584:12585
3CMA:01603:01604
3R8T:A1702:A1703
1EXD:B38:B39
2UUA:A574:A575
3R8T:B61:B62
1Q81:A639:A640
3U5H:51205:51206
1VQ6:0902:0903
1VQL:01603:01604
2PWT:B4:B5
3OI1:A2452:A2453
3CXC:01603:01604
3CCE:02515:02516
3CPW:01603:01604
3U5H:51230:51231
2J02:A634:A635
2J00:A634:A635
3KNI:A395:A396
2ZJR:X353:X354
3CCJ:02613:02614
2J03:A1216:A1217
1VQK:01603:01604
1FFK:01556:01557
3CC4:0902:0903
3CCR:01470:01471
1YIJ:01470:01471
3U5D:1769:1770
2J01:A1825:A1826
1NJI:A902:A903
3CME:02568:02569
2OTJ:0902:0903
3CXC:01101:01102
3F1E:A215:A216
3U5F:6592:6593
1Q82:A1101:A1102
1VQO:01101:01102
3KNK:A1862:A1863
3CC2:0902:0903
2VQF:A981:A982
1FFK:02313:02314
2OTL:01101:01102
2DU4:C26:C27
3OH5:A2452:A2453
1QVG:01470:01471
1YIT:02568:02569
1F7Y:B19:B20
3U5B:21097:21098
1QVG:01101:01102
2OTL:0288:0289
1XMQ:A1113:A1114
1FFK:0901:0902
3OHK:A1532:A1533
3CCR:02068:02069
1DK1:B19:B20
3OHY:A433:A434
3OGE:A1435:A1436
1K8A:A1470:A1471
1VQ6:02515:02516
3CPW:01409:01453
1K9M:A1101:A1102
3CCS:0665:0666
1K8A:A1168:A1169
1Q82:A1470:A1471
3OHZ:A530:A531
2J03:A1755:A1756
3NDB:M18:M19
1Q82:A1409:A1453
3CCS:0202:0203
3RKF:B52:B53
3U5B:21567:21568
1YJW:02568:02569
2ZJR:X948:X949
1YJ9:936:937
1G1X:E33:E34
3I56:01227:01228
1FFK:02467:02468
1KD1:A1470:A1471
2ZHA:B9:B10
1Q81:A1168:A1169
3CUL:D64:D65
1Q81:A1101:A1102
2ESI:A6:A7
3OI1:A530:A531
3KNH:A593:A594
1KD1:A1101:A1102
2V3C:N57:N58
3CCR:01524:01525
1N32:A69:A70
3OI1:A673:A674
3F1F:A431:A432
1VQ6:01426:01427
3F1E:A1324:A1325
1FFK:02520:02521
3ADC:D24:D25
3U5H:51361:51362
2J03:B59:B60
3OHC:A556:A557
3OL9:G3:G4
3CMA:02068:02069
1M90:A1168:A1169
2QA4:0767:0768
2J01:B59:B60
1YI2:02613:02614
3CCE:01055:01056
3OGE:A1206:A1207
3OHZ:A673:A674
3OHJ:A272:A273
3NDB:M76:M77
2J02:A1384:A1385
3CC4:01426:01427
3U5F:61409:61410
3R8S:A2347:A2348
3CXC:01168:01169
3CC4:0584:0585
1Q86:A2613:A2614
2QEX:01426:01427
1YJW:02613:02614
3GOG:A10:A11
2J01:A2191:A2192
3OLA:C3:C4
3CCJ:02591:02592
3G71:02613:02614
1FFK:01423:01424
3U5F:61579:61580
3OLA:G3:G4
3OHZ:A1863:A1864
3OHZ:A926:A927
3CC4:02613:02614
3F1H:A262:A263
3R8T:A2855:A2856
3OHC:A574:A575
1VQ6:02613:02614
2QA4:02118:02119
2J00:A1451:A1452
3R8T:A15:A16
3R8O:A401:A402
3CCJ:01808:01809
409D:A2:A3
1XMQ:A1015:A1016
3OH7:A473:A474
1VQ5:01101:01102
1Q86:A2568:A2569
1S72:01168:01169
2QA4:02067:02068
2F8S:C6:C7
3OGY:A1397:A1398
1FFK:01100:01101
1U9S:A80:A81
3OHK:A1472:A1473
2DR2:B59:B60
3R8T:A2722:A2723
3R8S:A516:A517
2J03:A2608:A2609
3OH5:A1836:A1837
3BBK:C1:C2
3CUN:D64:D65
2J01:A2608:A2609
3G6E:0289:0290
3ADD:C38:C39
1VQ7:02568:02569
3CCM:01101:01102
2QEX:02108:02109
2J00:A556:A557
3GOG:A23:A24
2ZJR:X878:X879
3G71:02672:02673
2J02:A556:A557
3CXC:0656:0657
2J00:A1284:A1285
3G71:01168:01169
3F1H:A1011:A1012
3OL8:K3:K4
3CMA:02189:02190
1VQM:02613:02614
2J02:A1284:A1285
3OH5:A1769:A1770
1YJW:01055:01056
3F1H:A1952:A1953
3OHY:A215:A216
2QA4:0409:0410
2QA4:0570:0571
1VQ7:02613:02614
3CCM:02672:02673
3CCS:02672:02673
3G8T:Q117:Q118
3FO6:A11:A12
1EUY:B38:B39
3F1E:A1118:A1119
3U5D:11264:11265
3CCL:02068:02069
3ADD:C12:C13
2UXC:A1109:A1110
3OH5:A1963:A1964
3F1G:A1118:A1119
3CCQ:091:092
2UXC:A1048:A1049
1VQK:02108:02109
2J01:A145:A146
1VQP:02613:02614
2J03:A145:A146
1RPU:D11:D12
3OHY:A924:A925
3R8O:A645:A646
3CCL:02672:02673
3CCS:02591:02592
2J02:A262:A263
1VQN:02736:02737
1VQP:02672:02673
1EFW:C67:C68
3R8O:A597:A598
3I56:01433:01434
3LWO:D13:D14
3DS7:B24:B25
1S72:02613:02614
2EEW:A24:A25
3KNI:B58:B59
3CPW:02613:02614
3FO6:A13:A14
1VQM:01433:01434
1S72:01433:01434
2VQF:A126:A127
3CME:01633:01634
3CMA:01433:01434
2J01:A2728:A2729
2J03:A2728:A2729
3OI1:A2015:A2016
3CME:01416:01417
2UXC:A1223:A1224
3OH7:A2015:A2016
1I9V:A12:A13
1VQO:01416:01417
3OHZ:A2015:A2016
3U5D:1521:1523
2J01:A1519:A1520
1VQP:01416:01417
2J03:A1519:A1520
3CC2:01416:01417
3OH5:A2015:A2016
1VQK:01416:01417
1YIT:01416:01417
1YIJ:01416:01417
1M90:A1416:A1417
1VQ5:01416:01417
2QEX:01416:01417
3CC7:01416:01417
3CD6:01416:01417
1VQ6:01416:01417
3R8O:A1526:A1528
1YJW:01416:01417
1VQN:01416:01417
1VQ7:01416:01417
1FFY:T12:T13
3OH7:A1301:A1302
3U5H:5527:5529
3U5F:61018:61019
3OGE:A967:A968
2ZJR:X2434:X2435
3KNK:A3:A4
1TTT:F12:F13
3KNH:X2:X3
3KNH:A53:A54
3KNI:A1835:A1836
3R8T:A2847:A2848
3KNH:A565:A566
3KNK:A1824:A1825
3IAB:R24:R25
3HL2:E37:E38
3R8N:A811:A812
2UUA:A53:A54
1VQ7:02291:02292
3KFU:L12:L13
2OTL:02291:02292
3R8S:A2038:A2039
1N32:A727:A728
3U5D:11977:11978
3AMT:B41:B42
3CME:02291:02292
1YJN:01603:01604
1YJW:02291:02292
3OH5:A250:A251
3CC7:02291:02292
3OH7:A1210:A1211
3OH7:A2591:A2592
1N8R:A2291:A2292
1VQ4:02291:02292
3U5D:12418:12419
3OGE:A1033:A1034
3CC7:01269:01270
1VQN:02177:02178
1VQN:02291:02292
3CPW:02291:02292
3KNI:A2202:A2203
1VQM:02177:02178
1VQ4:01603:01604
3CCJ:02159:02160
1YIT:01603:01604
1Q82:A2291:A2292
3CCJ:02177:02178
1NJI:A1269:A1270
3OHZ:A250:A251
3OH5:A300:A301
3CC2:01269:01270
3OI1:A250:A251
1VQK:02291:02292
1YI2:02291:02292
3OH5:A2591:A2592
3I56:01269:01270
1YHQ:02291:02292
3KNI:A473:A474
1S72:02291:02292
3F1H:A2039:A2040
1LNG:B93:B94
3OL6:B14:B15
1Q82:A1603:A1604
1C0A:B12:B13
1YIT:02177:02178
1M90:A1603:A1604
1YI2:01603:01604
1YJ9:02177:02178
1VQ6:01603:01604
3OHD:A1451:A1452
2QA4:0940:0941
3FO6:A39:A40
3U5D:393:394
3OHC:A1451:A1452
2J00:W67:W68
1N8R:A63:A64
3CCR:02613:02614
1FJG:A748:A749
3CCE:02709:02710
1VQK:02672:02673
1Q81:A1055:A1056
1KD1:A1055:A1056
2J00:A740:A741
3ADB:C12:C13
1YIJ:01168:01169
3CCS:02222:02223
1VQ6:02568:02569
1FJG:A686:A687
2XLJ:B12:B13
3CD6:02709:02710
1DDY:A5:A6
3OH5:A987:A988
3CCE:02736:02737
1N8R:A2068:A2069
3OH7:A987:A988
1QRU:B46:B47
1YIT:01168:01169
2ZJR:X2494:X2495
3CPW:02736:02737
2XLK:D12:D13
2J01:A1387:A1388
3OHK:A395:A396
1Q82:A2068:A2069
2B57:A38:A39
1VQ9:02736:02737
3R8S:A301:A302
1YIJ:0289:0290
3F1F:A842:A843
2J02:A740:A741
1YI2:0289:0290
1YJW:02736:02737
2XLK:C12:C13
1S72:02119:02120
1JJ2:02119:02120
1YJ9:01433:01434
3F1H:A2002:A2003
1DI2:G6:G7
1K8A:A1433:A1434
3CD6:02341:02342
1N8R:A1433:A1434
3CC2:0289:0290
2UUA:A1206:A1207
3ADD:C6:C7
3ADB:C29:C30
3CME:0757:0758
1M90:A1433:A1434
3CMA:0757:0758
2QA4:02545:02546
1VQ9:01433:01434
3CXC:01433:01434
1VQ8:01433:01434
3CCE:01433:01434
2OTJ:01433:01434
3I56:01633:01634
Closest classifer groups: show all      show selected
Group Members RMSD
base-ribose/H_0BR 495 0.766
base-ribose/W_6BR 214 1.211
bp/HS_cis 1 1.212
bp/SH_cis 1 1.212
base-phosphate/H_0BPh 39 1.443
bp/WW_tran 59 1.447
previously-uncategorized/unknown-0104 179 1.468
stacking/<< 2466 1.475
stacking/>< 186 1.484
bp/HW_cis 147 1.533

Extra

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Reference image (generated by PyMOL):
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All members (generated by PyMOL):
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