ClaRNA

Doublet Group info: classifier/previously-uncategorized/neighbours-0008/Pu-Py

distance statistics     members distance graph (clans)     superimpose     cluster

Details

N. type: None
Program used: None
Category: classifier
SubCategory: previously-uncategorized
Desc: neighbours-0008/Pu-Py
Members:
count: 377
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2V3C:N33:N34
3NDB:M52:M53
2V3C:M33:M34
2CKY:B58:B59
1XMQ:A409:A413
3CCJ:01129:01130
2CKY:A58:A59
1LNG:B35:B36
3U5B:2154:2155
1U9S:A12:A13
3CC7:01157:01158
3R8S:A2160:A2161
3D2X:B58:B59
2QEX:01157:01158
2HOM:A59:A60
3HL2:E45:E46
3CCQ:01129:01130
3CCR:01157:01158
1YJN:01157:01158
2J03:A2429:A2430
2J01:A2429:A2430
3CCL:01157:01158
3CCE:01157:01158
3I56:01157:01158
3CCV:01157:01158
3D2G:A58:A59
2GDI:X61:X62
3PDR:A54:A55
2OTJ:01157:01158
3CCS:01129:01130
2QBZ:X54:X55
3CCU:01157:01158
3CD6:01157:01158
2ZJR:X1087:X1088
3F1E:A835:A836
1YI2:01129:01130
3F1G:A835:A836
3CCQ:01157:01158
3KNK:A1866:A1867
3R8N:A955:A956
3CC4:01157:01158
3U5F:61176:61177
1YJW:01157:01158
2GDI:Y61:Y62
3R8N:A861:A862
1YIT:01157:01158
2UUA:A767:A768
3I56:01146:01147
3R8T:A2544:A2545
3KNI:A2457:A2458
2ZJR:X2339:X2340
1Q82:A1146:A1147
1N32:A835:A836
1VQK:01157:01158
1YJW:01146:01147
1VQ5:01157:01158
3F1E:A929:A930
1Q81:A1146:A1147
1N8R:A1146:A1147
1VQ5:01146:01147
2VQE:A835:A836
3CC2:01146:01147
1K9M:A1146:A1147
3CCS:01157:01158
1VQO:01157:01158
1S72:01146:01147
3F1G:A929:A930
3OGY:A835:A836
3G71:01157:01158
1YJ9:01157:01158
3D2G:A55:A56
3CCL:01129:01130
3CC4:01146:01147
3OGE:A835:A836
1KD1:A1146:A1147
3R8N:A462:A463
1YI2:01146:01147
3F1F:A2536:A2537
3R8S:A1076:A1077
1YHQ:01157:01158
1K9M:A2428:A2429
1M90:A1146:A1147
1K8A:A1146:A1147
1XMQ:A835:A836
3CME:01157:01158
1YJ9:01146:01147
1MMS:C32:C33
2UXC:A767:A768
2OTL:01129:01130
3R8T:A1384:A1385
3PDR:X54:X55
2UXC:A835:A836
3CME:01146:01147
3F1H:A2536:A2537
1KD1:A2428:A2429
1K8A:A2428:A2429
1NJI:A1146:A1147
2J02:A929:A930
1Q86:A2428:A2429
2OTJ:01146:01147
1VQ6:01146:01147
2J00:A929:A930
2J02:A835:A836
1NJI:A2428:A2429
1JJ2:02428:02429
1JJ2:01146:01147
2QEX:01129:01130
2J00:A835:A836
1FJG:A835:A836
3CMA:01157:01158
1MMS:D32:D33
2UUB:A835:A836
1VQN:01157:01158
3OI0:A835:A836
3OHD:A835:A836
3CC4:01129:01130
3OHC:A929:A930
3OHC:A835:A836
1YHQ:01146:01147
3OHY:A835:A836
3CXC:02428:02429
1VQ8:01157:01158
1QA6:D32:D33
1QA6:C32:C33
1FJG:A767:A768
3OHD:A929:A930
1M90:A2428:A2429
2J00:A1068:A1069
1FFK:02381:02382
3G6E:01157:01158
2J02:A1068:A1069
3CPW:01146:01147
1QVG:02428:02429
3OHD:A767:A768
1VQK:01146:01147
3CMA:01146:01147
1QA6:D15:D16
1QA6:C15:C16
1YIT:01146:01147
1N8R:A2428:A2429
1Q82:A2428:A2429
1VQ9:01157:01158
3U5H:52674:52675
2VQF:A929:A930
3CPW:02428:02429
1VQN:01146:01147
3R8O:A955:A956
3OHC:A767:A768
2QA4:01145:01146
1VQ5:01129:01130
1VQP:01146:01147
3OHJ:A2382:A2383
1VQM:01146:01147
1VQL:01146:01147
3KNI:A1866:A1867
3OH5:A2382:A2383
1VQ8:01146:01147
1Q81:A2428:A2429
3OH7:A2382:A2383
3U5B:21164:21165
3OHK:A2382:A2383
2UUB:A767:A768
3U5F:6328:6329
1M90:A1129:A1130
1VQL:01157:01158
3OI1:A2382:A2383
3U5D:12673:12674
2UUA:A835:A836
3F1F:A1410:A1411
3F1F:A2547:A2548
3CME:02439:02440
3F1H:A1410:A1411
1Y39:C15:C16
2VQF:A835:A836
3OHZ:A2382:A2383
1VQ4:01129:01130
3U5D:12684:12685
1K8A:A2439:A2440
3CCL:02439:02440
1VQP:02439:02440
1VQ7:02439:02440
1FFK:02392:02393
1VQO:02439:02440
3CPW:02439:02440
1YJ9:02439:02440
2ZJR:X1816:X1817
1VQN:02439:02440
2J01:A1867:A1868
1S72:02439:02440
3CCS:02439:02440
2ZJR:X2350:X2351
3CC4:02439:02440
3U5H:52105:52106
3R8S:A1384:A1385
3U5H:51208:51209
2QA4:02438:02439
1N32:A929:A930
2UUA:A929:A930
1JJ2:02439:02440
3CD6:02439:02440
3G6E:02439:02440
2UXC:A929:A930
2J03:A1867:A1868
1YJ9:01459:01460
3G71:02439:02440
3KNI:A1346:A1347
1VQ4:02439:02440
3R8T:A2555:A2556
1VQ8:02439:02440
2VQE:A929:A930
3OHK:A2393:A2394
3CC2:02439:02440
3I56:01459:01460
3OH7:A2393:A2394
3R8S:A2556:A2557
3F1F:A1945:A1946
2OTL:02439:02440
2J01:A1340:A1341
3R8T:A1943:A1944
2QA4:01458:01459
1YHQ:02439:02440
3U5D:12101:12102
1VQ9:02439:02440
3F1H:A1945:A1946
3CC7:02439:02440
3MOJ:A55:A56
3OH5:A2393:A2394
3R8S:A1944:A1945
3OHJ:A2393:A2394
2J03:A1340:A1341
1N8R:A2439:A2440
3OHZ:A1867:A1868
3OI1:A1867:A1868
3OH5:A1867:A1868
3CCM:02439:02440
1FG0:A430:A431
3CXC:01459:01460
1YIJ:02439:02440
1YI2:02439:02440
3OHK:A1867:A1868
3OH7:A1867:A1868
3U5D:11545:11546
1Q81:A1459:A1460
1VQ5:01459:01460
3OHJ:A1867:A1868
1VQN:01459:01460
3U5F:659:660
3G71:01459:01460
3OGE:A929:A930
1QVG:02439:02440
3OGY:A929:A930
1VQO:01459:01460
1FJG:A929:A930
1Q82:A2439:A2440
1QVG:01459:01460
1YJW:01459:01460
1VQ7:01459:01460
3CCS:01459:01460
1VQ8:01459:01460
3CMA:01459:01460
1VQ6:01459:01460
3U5H:51551:51552
3CME:01459:01460
1M90:A1459:A1460
1VQ9:01459:01460
1VQM:01459:01460
1YJN:01459:01460
3CCM:01459:01460
2QEX:01459:01460
3CCR:01459:01460
1VQL:01459:01460
1Q86:A1459:A1460
1FFK:01412:01413
1NJI:A1459:A1460
1YIT:01459:01460
1VQK:01459:01460
3CPW:01459:01460
1YHQ:01459:01460
3CCU:01459:01460
1K8A:A1459:A1460
1VQP:01459:01460
3CCL:01459:01460
1N8R:A1459:A1460
3OHZ:A2393:A2394
1JJ2:01459:01460
3CCE:01459:01460
2J01:A2440:A2441
1KD1:A1459:A1460
2OTJ:01459:01460
1S72:01459:01460
3F1F:A1085:A1086
2J03:A2440:A2441
3F1H:A1085:A1086
1Q82:A1459:A1460
1YI2:01459:01460
3OI1:A2393:A2394
3CC2:01459:01460
3CCV:01459:01460
1K9M:A1459:A1460
3G6E:01459:01460
1VQ4:01459:01460
3CC4:01459:01460
3CD6:01459:01460
3CC7:01459:01460
2OTL:01459:01460
1YIJ:01459:01460
3CCQ:01459:01460
3U5H:51028:51029
3CC2:01157:01158
2OTJ:02439:02440
3F1H:A2547:A2548
1KD1:A1129:A1130
1K9M:A1129:A1130
1K8A:A1129:A1130
1VQP:01157:01158
1VQM:01157:01158
3OHK:A1340:A1341
1XMQ:A767:A768
1N8R:A1129:A1130
3KNH:A920:A921
1QVG:01129:01130
2OTJ:01129:01130
3OHJ:A1340:A1341
3CCJ:01459:01460
1Q86:A2439:A2440
1Q82:A1129:A1130
1VQ9:01146:01147
3U5B:2331:2332
1S72:01129:01130
3CXC:02439:02440
1YHQ:01129:01130
3CME:01129:01130
3CCJ:02439:02440
1NJI:A1157:A1158
1Q81:A1129:A1130
1Q86:A1129:A1130
1VQ6:02439:02440
3OHZ:A1340:A1341
3CCV:02439:02440
1M90:A2439:A2440
1HC8:D15:D16
1VQ4:01157:01158
3U5H:52685:52686
3OI1:A1340:A1341
3CCR:02439:02440
1K9M:A2439:A2440
3CC2:01129:01130
3OH7:A1340:A1341
1VQ7:01157:01158
1S72:01157:01158
3OH5:A1340:A1341
3CCU:02439:02440
1VQ7:01129:01130
2UUB:A929:A930
3OHY:A929:A930
1Q81:A2439:A2440
1YJW:02439:02440
1JJ2:01157:01158
1VQL:02439:02440
3CCQ:02439:02440
3OI0:A929:A930
1YIT:02439:02440
3CCE:02439:02440
3I56:02439:02440
3CCU:01129:01130
1VQK:02439:02440
3CMA:02439:02440
3KNH:A1059:A1060
1NJI:A2439:A2440
1VQ5:02439:02440
3CPW:01157:01158
1XMQ:A929:A930
2QEX:02439:02440
1KD1:A2439:A2440
1HC8:C15:C16
1VQM:02439:02440
1YJN:02439:02440
Closest classifer groups: show all      show selected
Group Members RMSD
base-ribose/H_0BR 1055 0.381
previously-uncategorized/neighbours-0015 239 1.418
base-ribose/H_7BR 163 1.487
previously-uncategorized/neighbours-0022 221 1.989
previously-uncategorized/neighbours-0023 214 1.998
bp/HS_cis 70 2.002
bp/SH_cis 70 2.002
previously-uncategorized/unknown-0169 139 2.367
bp/HS_tran 141 2.553
bp/SH_tran 141 2.553

Extra

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Reference image (generated by PyMOL):
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All members (generated by PyMOL):
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