ClaRNA

Doublet Group distance statistics: 44018

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Distances from reference structure (by RMSD)

23, 66, 30, 137, 98, 55, 45, 10, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C4 A 0, 0.055, 0.181, 0.307, 0.591 max_d=0.591 avg_d=0.181 std_dev=0.126
N1 B 0, 0.073, 0.209, 0.345, 0.540 max_d=0.540 avg_d=0.209 std_dev=0.136
N9 A 0, 0.149, 0.299, 0.450, 0.671 max_d=0.671 avg_d=0.299 std_dev=0.151
N3 A 0, 0.178, 0.357, 0.536, 0.810 max_d=0.810 avg_d=0.357 std_dev=0.179
N1 A 0, 0.154, 0.335, 0.516, 0.759 max_d=0.759 avg_d=0.335 std_dev=0.181
C5 A 0, 0.161, 0.351, 0.541, 1.042 max_d=1.042 avg_d=0.351 std_dev=0.190
C2 A 0, 0.173, 0.369, 0.565, 0.869 max_d=0.869 avg_d=0.369 std_dev=0.196
C6 B 0, 0.117, 0.317, 0.517, 0.978 max_d=0.978 avg_d=0.317 std_dev=0.200
N3 B 0, 0.215, 0.416, 0.616, 1.057 max_d=1.057 avg_d=0.416 std_dev=0.201
C4 B 0, 0.105, 0.325, 0.544, 1.228 max_d=1.228 avg_d=0.325 std_dev=0.219
C6 A 0, 0.205, 0.428, 0.651, 1.095 max_d=1.095 avg_d=0.428 std_dev=0.223
C2 B 0, 0.169, 0.399, 0.628, 0.927 max_d=0.927 avg_d=0.399 std_dev=0.229
C1' A 0, 0.209, 0.445, 0.680, 1.030 max_d=1.030 avg_d=0.445 std_dev=0.236
O4 B 0, 0.178, 0.436, 0.693, 1.820 max_d=1.820 avg_d=0.436 std_dev=0.257
C1' B 0, 0.072, 0.334, 0.596, 1.212 max_d=1.212 avg_d=0.334 std_dev=0.262
C8 A 0, 0.196, 0.488, 0.779, 1.318 max_d=1.318 avg_d=0.488 std_dev=0.292
C5 B 0, 0.061, 0.357, 0.654, 1.473 max_d=1.473 avg_d=0.357 std_dev=0.297
N7 A 0, 0.244, 0.579, 0.913, 1.822 max_d=1.822 avg_d=0.579 std_dev=0.335
O4' B 0, 0.181, 0.533, 0.884, 1.811 max_d=1.811 avg_d=0.533 std_dev=0.351
N6 A 0, 0.148, 0.558, 0.967, 1.922 max_d=1.922 avg_d=0.558 std_dev=0.409
O2 B 0, 0.209, 0.639, 1.069, 1.857 max_d=1.857 avg_d=0.639 std_dev=0.430
C4' B 0, 0.183, 0.845, 1.508, 2.861 max_d=2.861 avg_d=0.845 std_dev=0.662
C2' B 0, 0.118, 0.862, 1.607, 3.132 max_d=3.132 avg_d=0.862 std_dev=0.744
C3' B 0, 0.220, 0.979, 1.738, 2.950 max_d=2.950 avg_d=0.979 std_dev=0.759
C5' B 0, 0.183, 1.114, 2.044, 3.619 max_d=3.619 avg_d=1.114 std_dev=0.931
O3' B 0, 0.151, 1.216, 2.282, 3.739 max_d=3.739 avg_d=1.216 std_dev=1.066
O5' B 0, 0.324, 1.409, 2.494, 3.425 max_d=3.425 avg_d=1.409 std_dev=1.085
O4' A 0, 0.262, 1.416, 2.569, 3.571 max_d=3.571 avg_d=1.416 std_dev=1.153
O2' B 0, 0.125, 1.279, 2.433, 4.524 max_d=4.524 avg_d=1.279 std_dev=1.154
O3' A 0, 0.243, 1.546, 2.850, 4.398 max_d=4.398 avg_d=1.546 std_dev=1.304
C2' A 0, 0.385, 1.712, 3.039, 3.424 max_d=3.424 avg_d=1.712 std_dev=1.327
C3' A 0, 0.417, 1.759, 3.101, 4.076 max_d=4.076 avg_d=1.759 std_dev=1.342
C4' A 0, 0.307, 1.814, 3.322, 4.483 max_d=4.483 avg_d=1.814 std_dev=1.507
P B 0, 0.267, 1.840, 3.414, 4.673 max_d=4.673 avg_d=1.840 std_dev=1.573
OP1 B 0, 0.348, 2.243, 4.137, 6.976 max_d=6.976 avg_d=2.243 std_dev=1.894
O2' A 0, 0.522, 2.643, 4.764, 5.482 max_d=5.482 avg_d=2.643 std_dev=2.121
OP2 B 0, 0.354, 2.833, 5.312, 6.848 max_d=6.848 avg_d=2.833 std_dev=2.479
C5' A 0, 0.527, 3.355, 6.183, 7.255 max_d=7.255 avg_d=3.355 std_dev=2.828
O5' A 0, 0.638, 4.166, 7.694, 8.755 max_d=8.755 avg_d=4.166 std_dev=3.528
P A 0, 1.114, 5.871, 10.629, 11.666 max_d=11.666 avg_d=5.871 std_dev=4.757
OP2 A 0, 1.623, 6.593, 11.564, 12.201 max_d=12.201 avg_d=6.593 std_dev=4.970
OP1 A 0, 1.235, 6.433, 11.630, 13.089 max_d=13.089 avg_d=6.433 std_dev=5.197

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.05 0.00 0.02 0.02 0.01 0.02 0.09 0.02 0.01 0.06 0.05 0.02 0.01 0.01 0.02 0.30 0.01 0.47 0.64 0.48 0.40
C2 0.05 0.00 0.46 0.54 0.01 0.74 0.03 1.54 0.07 0.02 0.02 0.01 0.01 0.03 0.02 0.34 0.31 0.47 1.03 1.46 1.77 1.54
C2' 0.00 0.46 0.00 0.01 0.24 0.03 0.11 0.19 0.21 0.24 0.34 0.46 0.10 0.14 0.03 0.00 0.06 0.02 0.48 0.75 0.78 0.55
C3' 0.02 0.54 0.01 0.00 0.28 0.01 0.27 0.02 0.32 0.43 0.42 0.52 0.16 0.39 0.19 0.02 0.01 0.02 0.14 0.58 0.62 0.31
C4 0.02 0.01 0.24 0.28 0.00 0.34 0.01 0.71 0.02 0.01 0.04 0.01 0.01 0.01 0.01 0.20 0.20 0.25 0.23 0.50 0.66 0.40
C4' 0.01 0.74 0.03 0.01 0.34 0.00 0.17 0.01 0.33 0.39 0.56 0.71 0.19 0.26 0.07 0.25 0.04 0.01 0.02 0.36 0.40 0.10
C5 0.02 0.03 0.11 0.27 0.01 0.17 0.00 0.40 0.01 0.01 0.02 0.01 0.01 0.00 0.01 0.24 0.18 0.11 0.56 0.70 0.73 0.52
C5' 0.09 1.54 0.19 0.02 0.71 0.01 0.40 0.00 0.73 0.57 1.21 1.42 0.45 0.35 0.13 0.11 0.19 0.02 0.01 0.40 0.36 0.02
C6 0.02 0.07 0.21 0.32 0.02 0.33 0.01 0.73 0.00 0.02 0.02 0.04 0.00 0.01 0.02 0.26 0.19 0.22 0.32 0.62 0.73 0.47
C8 0.01 0.02 0.24 0.43 0.01 0.39 0.01 0.57 0.02 0.00 0.03 0.01 0.03 0.00 0.00 0.32 0.23 0.26 1.50 1.62 1.60 1.53
N1 0.06 0.02 0.34 0.42 0.04 0.56 0.02 1.21 0.02 0.03 0.00 0.02 0.01 0.02 0.04 0.28 0.25 0.35 0.60 1.05 1.25 1.05
N3 0.05 0.01 0.46 0.52 0.01 0.71 0.01 1.42 0.04 0.01 0.02 0.00 0.01 0.01 0.02 0.33 0.32 0.47 0.88 1.16 1.53 1.29
N6 0.02 0.01 0.10 0.16 0.01 0.19 0.01 0.45 0.00 0.03 0.01 0.01 0.00 0.03 0.02 0.21 0.16 0.12 0.44 0.84 0.72 0.44
N7 0.01 0.03 0.14 0.39 0.01 0.26 0.00 0.35 0.01 0.00 0.02 0.01 0.03 0.00 0.01 0.32 0.24 0.14 1.31 1.45 1.53 1.36
N9 0.01 0.02 0.03 0.19 0.01 0.07 0.01 0.13 0.02 0.00 0.04 0.02 0.02 0.01 0.00 0.16 0.17 0.01 0.70 0.80 0.67 0.61
O2' 0.02 0.34 0.00 0.02 0.20 0.25 0.24 0.11 0.26 0.32 0.28 0.33 0.21 0.32 0.16 0.00 0.08 0.17 0.41 0.76 0.91 0.54
O3' 0.30 0.31 0.06 0.01 0.20 0.04 0.18 0.19 0.19 0.23 0.25 0.32 0.16 0.24 0.17 0.08 0.00 0.22 0.25 0.59 0.66 0.35
O4' 0.01 0.47 0.02 0.02 0.25 0.01 0.11 0.02 0.22 0.26 0.35 0.47 0.12 0.14 0.01 0.17 0.22 0.00 0.39 0.55 0.32 0.33
O5' 0.47 1.03 0.48 0.14 0.23 0.02 0.56 0.01 0.32 1.50 0.60 0.88 0.44 1.31 0.70 0.41 0.25 0.39 0.00 0.02 0.02 0.01
OP1 0.64 1.46 0.75 0.58 0.50 0.36 0.70 0.40 0.62 1.62 1.05 1.16 0.84 1.45 0.80 0.76 0.59 0.55 0.02 0.00 0.01 0.01
OP2 0.48 1.77 0.78 0.62 0.66 0.40 0.73 0.36 0.73 1.60 1.25 1.53 0.72 1.53 0.67 0.91 0.66 0.32 0.02 0.01 0.00 0.01
P 0.40 1.54 0.55 0.31 0.40 0.10 0.52 0.02 0.47 1.53 1.05 1.29 0.44 1.36 0.61 0.54 0.35 0.33 0.01 0.01 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.44 0.45 0.86 0.61 0.49 0.45 0.49 0.47 0.42 0.42 0.47 0.49 0.86 0.74 0.54 0.43 0.21 0.62 0.48 0.17
C2 0.57 0.61 1.05 0.66 0.54 0.49 0.46 0.58 0.37 0.48 0.61 0.75 1.31 0.91 0.56 0.36 0.32 0.81 1.04 0.39
C2' 0.61 0.79 1.02 0.69 0.96 0.50 0.95 0.46 0.83 0.74 0.89 0.74 0.99 0.86 1.09 0.46 0.36 0.43 0.55 0.55
C3' 0.91 1.09 1.41 1.02 1.20 0.51 1.18 0.47 1.11 1.05 1.17 1.03 1.28 0.76 1.06 0.51 0.91 0.73 0.96 1.11
C4 0.48 0.49 0.97 0.66 0.47 0.47 0.43 0.51 0.35 0.40 0.48 0.59 1.10 0.88 0.54 0.38 0.25 0.78 0.75 0.28
C4' 0.99 0.96 1.59 1.34 0.79 0.75 0.73 0.56 0.76 0.90 0.89 1.06 1.63 1.19 0.66 0.67 0.59 0.38 0.68 0.53
C5 0.47 0.47 0.97 0.70 0.46 0.49 0.44 0.52 0.35 0.39 0.46 0.58 1.11 0.93 0.54 0.41 0.26 0.82 0.73 0.31
C5' 1.40 1.42 2.13 1.82 1.15 1.00 1.03 0.68 1.09 1.30 1.33 1.57 2.35 1.76 1.03 0.92 0.70 0.44 0.83 0.51
C6 0.53 0.54 1.05 0.73 0.48 0.51 0.42 0.53 0.34 0.43 0.52 0.68 1.24 0.98 0.57 0.40 0.28 0.85 0.85 0.36
C8 0.45 0.45 0.86 0.68 0.54 0.50 0.54 0.50 0.46 0.43 0.47 0.50 0.89 0.87 0.55 0.49 0.25 0.77 0.51 0.22
N1 0.55 0.59 1.06 0.69 0.50 0.50 0.42 0.57 0.34 0.45 0.57 0.74 1.31 0.95 0.56 0.37 0.32 0.84 1.01 0.41
N3 0.53 0.57 1.02 0.64 0.52 0.46 0.45 0.55 0.37 0.46 0.56 0.68 1.22 0.87 0.56 0.35 0.29 0.77 0.93 0.32
N6 0.30 0.34 0.42 0.40 0.33 0.45 0.31 0.46 0.27 0.27 0.34 0.45 0.56 0.98 0.33 0.36 0.24 0.54 0.51 0.20
N7 0.45 0.45 0.91 0.71 0.51 0.51 0.51 0.51 0.42 0.40 0.46 0.52 0.98 0.93 0.54 0.47 0.27 0.81 0.59 0.27
N9 0.44 0.45 0.90 0.65 0.48 0.46 0.47 0.49 0.40 0.40 0.45 0.51 0.95 0.83 0.54 0.43 0.23 0.73 0.57 0.21
O2' 0.89 0.97 1.01 1.03 1.16 1.07 1.17 0.94 1.02 0.94 1.06 0.94 1.07 1.49 1.25 0.95 0.43 0.59 0.68 0.45
O3' 0.81 1.03 1.16 0.94 1.26 0.61 1.30 0.78 1.18 1.02 1.17 0.90 0.80 0.71 0.84 0.58 1.34 1.17 1.51 1.71
O4' 0.72 0.65 1.21 1.02 0.60 0.65 0.60 0.57 0.55 0.61 0.60 0.76 1.28 0.97 0.41 0.61 0.37 0.78 0.53 0.22
O5' 2.36 2.48 3.15 2.63 2.14 1.65 1.94 1.10 2.03 2.32 2.39 2.63 3.42 2.50 2.11 1.59 1.26 0.52 0.79 0.76
OP1 2.71 3.12 3.56 2.81 2.76 1.66 2.42 1.09 2.43 2.80 3.09 3.32 4.16 2.86 2.72 1.69 1.28 1.04 1.25 1.04
OP2 2.83 3.24 3.59 2.82 3.10 1.83 2.85 1.32 2.80 2.99 3.29 3.34 3.96 2.69 3.11 1.92 1.63 1.26 1.14 1.24
P 2.57 2.88 3.43 2.74 2.57 1.64 2.30 1.05 2.32 2.63 2.84 3.05 3.88 2.70 2.58 1.64 1.28 0.78 0.94 0.83

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.03 0.00 0.02 0.05 0.01 0.02 0.10 0.02 0.01 0.03 0.04 0.03 0.36 0.02 0.00 0.50 0.54 0.57 0.46
C2 0.03 0.00 0.19 0.26 0.07 0.06 0.03 0.14 0.01 0.01 0.01 0.01 0.24 0.25 0.01 0.12 0.71 0.86 0.90 0.75
C2' 0.00 0.19 0.00 0.01 0.09 0.02 0.12 0.23 0.17 0.03 0.15 0.34 0.00 0.04 0.06 0.02 0.61 0.70 0.48 0.58
C3' 0.02 0.26 0.01 0.00 0.44 0.01 0.42 0.03 0.36 0.25 0.34 0.22 0.02 0.01 0.23 0.02 0.25 0.37 0.43 0.23
C4 0.05 0.07 0.09 0.44 0.00 0.19 0.01 0.26 0.02 0.05 0.02 0.05 0.35 0.22 0.01 0.05 0.95 1.34 1.37 1.14
C4' 0.01 0.06 0.02 0.01 0.19 0.00 0.23 0.01 0.22 0.10 0.09 0.09 0.33 0.03 0.11 0.01 0.02 0.48 0.25 0.14
C5 0.02 0.03 0.12 0.42 0.01 0.23 0.00 0.29 0.00 0.02 0.02 0.02 0.41 0.25 0.01 0.10 1.01 1.44 1.45 1.22
C5' 0.10 0.14 0.23 0.03 0.26 0.01 0.29 0.00 0.25 0.14 0.18 0.14 0.12 0.24 0.25 0.02 0.01 0.43 0.40 0.02
C6 0.02 0.01 0.17 0.36 0.02 0.22 0.00 0.25 0.00 0.01 0.04 0.02 0.36 0.18 0.01 0.14 0.93 1.20 1.23 1.05
N1 0.01 0.01 0.03 0.25 0.05 0.10 0.02 0.14 0.01 0.00 0.03 0.02 0.22 0.14 0.01 0.02 0.73 0.86 0.91 0.77
N3 0.03 0.01 0.15 0.34 0.02 0.09 0.02 0.18 0.04 0.03 0.00 0.01 0.31 0.19 0.01 0.10 0.83 1.10 1.13 0.95
O2 0.04 0.01 0.34 0.22 0.05 0.09 0.02 0.14 0.02 0.02 0.01 0.00 0.27 0.42 0.02 0.18 0.57 0.67 0.69 0.57
O2' 0.03 0.24 0.00 0.02 0.35 0.33 0.41 0.12 0.36 0.22 0.31 0.27 0.00 0.07 0.25 0.23 0.39 0.72 0.42 0.44
O3' 0.36 0.25 0.04 0.01 0.22 0.03 0.25 0.24 0.18 0.14 0.19 0.42 0.07 0.00 0.14 0.25 0.47 0.67 0.89 0.57
O4 0.02 0.01 0.06 0.23 0.01 0.11 0.01 0.25 0.01 0.01 0.01 0.02 0.25 0.14 0.00 0.04 0.98 1.42 1.50 1.20
O4' 0.00 0.12 0.02 0.02 0.05 0.01 0.10 0.02 0.14 0.02 0.10 0.18 0.23 0.25 0.04 0.00 0.37 0.44 0.58 0.34
O5' 0.50 0.71 0.61 0.25 0.95 0.02 1.01 0.01 0.93 0.73 0.83 0.57 0.39 0.47 0.98 0.37 0.00 0.02 0.02 0.01
OP1 0.54 0.86 0.70 0.37 1.34 0.48 1.44 0.43 1.20 0.86 1.10 0.67 0.72 0.67 1.42 0.44 0.02 0.00 0.02 0.01
OP2 0.57 0.90 0.48 0.43 1.37 0.25 1.45 0.40 1.23 0.91 1.13 0.69 0.42 0.89 1.50 0.58 0.02 0.02 0.00 0.01
P 0.46 0.75 0.58 0.23 1.14 0.14 1.22 0.02 1.05 0.77 0.95 0.57 0.44 0.57 1.20 0.34 0.01 0.01 0.01 0.00