sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHZ-A120-A108
X
>3CME-0112-0101
X
>1FFK-0112-0101
X
>1K9M-A112-A101
X
>1KD1-A112-A101
X
>1Q81-A112-A101
X
>1S72-0112-0101
X
>1YJ9-0112-0101
X
>1JJ2-0112-0101
X
>2OTJ-0112-0101
X
>3CC2-0112-0101
X
>1VQ4-0112-0101
X
</seq>
<hsp>
0 1:1.0
0 2:0.706174598442
0 3:0.772850802321
0 4:0.763183863653
0 5:0.730242136452
0 6:0.797650250335
0 7:0.710857662114
0 8:0.798645772422
0 9:0.811188476259
0 10:0.776995172249
0 11:0.809659328503
1 2:0.328798864217
1 3:0.269093445045
1 4:0.278325957881
1 5:0.318353966505
1 6:0.261589062581
1 7:0.365987514294
1 8:0.265656350688
1 9:0.255387968254
1 10:0.268175670148
1 11:0.262759225922
2 3:0.209437081815
2 4:0.182504055382
2 5:0.117734216668
2 6:0.234020991595
2 7:0.169252431685
2 8:0.236535094453
2 9:0.186279394573
2 10:0.206319927286
2 11:0.172408565788
3 4:0.0932523772911
3 5:0.161756745134
3 6:0.114730093517
3 7:0.174801667815
3 8:0.112447108994
3 9:0.171550607281
3 10:0.139188761301
3 11:0.161900101458
4 5:0.127377063708
4 6:0.126172524496
4 7:0.129745322157
4 8:0.12331928556
4 9:0.146169409861
4 10:0.134169970567
4 11:0.124537481364
5 6:0.167236098162
5 7:0.0998304270829
5 8:0.165939030049
5 9:0.124951944157
5 10:0.148627791118
5 11:0.105400439174
6 7:0.185734938158
6 8:0.0143689404598
6 9:0.114147627025
6 10:0.0520330124756
6 11:0.152669540325
7 8:0.178938319185
7 9:0.165666804788
7 10:0.181444651779
7 11:0.120635376107
8 9:0.116653311266
8 10:0.0616307987089
8 11:0.146964601174
9 10:0.0956918176418
9 11:0.112520642475
10 11:0.149285330873
</hsp>