sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A1566-A1487
X
>3Q51-A14-A13
X
>3OGE-A1090-A1089
X
>3OGY-A1090-A1089
X
>3OHC-A1090-A1089
X
>3OHD-A1090-A1089
X
>3R8N-A794-A793
X
>2UUB-A1090-A1089
X
</seq>
<hsp>
0 1:0.67111736844
0 2:0.999186984928
0 3:0.999999595195
0 4:0.976892245413
0 5:0.976840135678
0 6:0.995329150038
0 7:0.947318214322
1 2:0.665410444284
1 3:0.665332544196
1 4:0.650042805331
1 5:0.650578985395
1 6:0.669570955293
1 7:0.628235502424
2 3:0.00418519844557
2 4:0.0275301343644
2 5:0.0283794998555
2 6:0.0695931714713
2 7:0.0851173648124
3 4:0.0275846942222
3 5:0.0281853747042
3 6:0.0721908685393
3 7:0.0868065817013
4 5:0.00321534474053
4 6:0.0781844663964
4 7:0.0737967456268
5 6:0.078780309536
5 7:0.0741835853262
6 7:0.0915243662357
</hsp>