sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCJ-02234-02233
X
>1VQO-02234-02233
X
>1VQN-02234-02233
X
>1VQ8-02234-02233
X
>1VQP-02234-02233
X
>1VQK-02234-02233
X
>1VQM-02234-02233
X
</seq>
<hsp>
0 1:0.954164313853
0 2:0.66487208931
0 3:1.0
0 4:0.761336065381
0 5:0.938696214239
0 6:0.779183441477
1 2:0.468009497377
1 3:0.352029858683
1 4:0.270449043861
1 5:0.272888386536
1 6:0.269994528644
2 3:0.609147723552
2 4:0.322029457631
2 5:0.457033469879
2 6:0.284624032269
3 4:0.397486451535
3 5:0.272950709459
3 6:0.350616747875
4 5:0.307951478075
4 6:0.152504925544
5 6:0.239522329799
</hsp>