sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A348-A346
X
>2CV1-D73-D70
X
>2DXI-C73-C70
X
>2CV0-C73-C70
X
>1Z43-A59-A80
X
>2QA4-0870-0867
X
</seq>
<hsp>
0 1:0.999998205542
0 2:0.777897130997
0 3:0.774027699208
0 4:0.502319362925
0 5:0.520334390599
1 2:0.24976830531
1 3:0.252422175987
1 4:0.809646352165
1 5:0.946825663285
2 3:0.0566469257865
2 4:0.628986800001
2 5:0.78321340381
3 4:0.628612505063
3 5:0.794203514534
4 5:0.568802601664
</hsp>