sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A527-A528
X
>3F1H-A548-A549
X
>3F1F-A548-A549
X
>3R8T-A527-A528
X
>3OH5-A541-A542
X
>3OH7-A541-A542
X
>2V3C-M52-M53
X
</seq>
<hsp>
0 1:0.191553492602
0 2:0.190927447399
0 3:0.0874274363584
0 4:0.148712119953
0 5:0.149914533087
0 6:0.890733749159
1 2:0.00442703254482
1 3:0.220554265077
1 4:0.142563324447
1 5:0.138836958644
1 6:0.999659224929
2 3:0.218923231345
2 4:0.142032460296
2 5:0.138292490416
2 6:1.0
3 4:0.143184071661
3 5:0.145712633026
3 6:0.92393314714
4 5:0.00861184324785
4 6:0.99230105426
5 6:0.991646040147
</hsp>