sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNH-A785-A784
X
>3R8N-A814-A813
X
>3U5B-21009-21008
X
>3U5F-61021-61020
X
>3F1G-A794-A793
X
>3F1E-A794-A793
X
</seq>
<hsp>
0 1:0.992058905982
0 2:0.86408183809
0 3:0.999995988865
0 4:0.98128787437
0 5:0.968821496164
1 2:0.28062508872
1 3:0.30434747569
1 4:0.760767437489
1 5:0.765176957455
2 3:0.288708374672
2 4:0.638615314728
2 5:0.63618030249
3 4:0.706656815527
3 5:0.710539286398
4 5:0.040067472424
</hsp>