sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A2723-A2629
X
>3OI1-A2648-A2554
X
>3OHZ-A2648-A2554
X
>3OHJ-A2648-A2554
X
>3OH5-A2648-A2554
X
>3OH7-A2648-A2554
X
>3OHK-A2648-A2554
X
>3KNI-A2723-A2629
X
</seq>
<hsp>
0 1:0.802371926101
0 2:0.82195052217
0 3:1.0
0 4:0.865960497298
0 5:0.833033984437
0 6:0.962208103588
0 7:0.844458983788
1 2:0.138132773224
1 3:0.439644919674
1 4:0.452137411996
1 5:0.462520068458
1 6:0.420139975091
1 7:0.658327677388
2 3:0.387122228103
2 4:0.425506033764
2 5:0.46796071231
2 6:0.389829509843
2 7:0.589128291938
3 4:0.239578437881
3 5:0.344528916054
3 6:0.126597186703
3 7:0.77457852463
4 5:0.141147416833
4 6:0.169599027548
4 7:0.802894704438
5 6:0.243414617863
5 7:0.852443817236
6 7:0.787334948992
</hsp>