sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2UUA-A1201-A1199
X
>3R8N-A1223-A1221
X
>2UUB-A1201-A1199
X
>3R8N-A967-A965
X
>3R8O-A967-A965
X
>1FJG-A941-A939
X
</seq>
<hsp>
0 1:0.167000517306
0 2:0.0966332737849
0 3:0.86766188945
0 4:1.0
0 5:0.948196408843
1 2:0.221135706204
1 3:0.830812283595
1 4:0.956654981648
1 5:0.922529845302
2 3:0.860975490267
2 4:0.991825992444
2 5:0.935549435754
3 4:0.227491836536
3 5:0.155966097984
4 5:0.139720644031
</hsp>