sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CMA-0180-0416
X
>3CCM-0180-0416
X
>3CCV-0180-0416
X
>3CCU-0180-0416
X
>1VQM-0180-0416
X
>1VQP-0180-0416
X
>3G71-0180-0416
X
>1VQL-0180-0416
X
>1VQ8-0180-0416
X
>1NJI-A180-A416
X
</seq>
<hsp>
0 1:0.640952258772
0 2:0.97854146777
0 3:0.999977385544
0 4:0.608925351984
0 5:0.503274217744
0 6:0.718304695492
0 7:0.544027241368
0 8:0.636637116251
0 9:0.82795003321
1 2:0.783206651077
1 3:0.745370821237
1 4:0.802405289048
1 5:0.511393185257
1 6:0.722300025871
1 7:0.599006265322
1 8:0.665502968114
1 9:0.869065773425
2 3:0.334187493672
2 4:0.675991156661
2 5:0.692882591999
2 6:0.707196127219
2 7:0.670264313567
2 8:0.752746317146
2 9:0.457780385759
3 4:0.700933925369
3 5:0.67339835284
3 6:0.547982217386
3 7:0.699622649103
3 8:0.7268379882
3 9:0.626112808012
4 5:0.327682749815
4 6:0.433634966416
4 7:0.308584358313
4 8:0.304580689612
4 9:0.631357872108
5 6:0.415052455896
5 7:0.204776999484
5 8:0.193964721708
5 9:0.71654175317
6 7:0.439751733332
6 8:0.425437662827
6 9:0.708261834401
7 8:0.245195039588
7 9:0.624058201642
8 9:0.772054386995
</hsp>