sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3DJ2-A94-A41
X
>3DIO-X94-X41
X
>3DIX-A94-A41
X
>3DIY-A94-A41
X
>3DIR-A94-A41
X
>3DIL-A94-A41
X
>3DIQ-A94-A41
X
>3DIG-X94-X41
X
>3DJ0-A94-A41
X
>3DIM-A94-A41
X
>3DIZ-A94-A41
X
>3D0U-A91-A38
X
</seq>
<hsp>
0 1:0.428444366098
0 2:0.385858236434
0 3:0.529728991165
0 4:0.66189676238
0 5:0.358596083023
0 6:0.584759775717
0 7:0.416412089022
0 8:0.163406780956
0 9:0.289831712743
0 10:0.284593746952
0 11:0.553527444062
1 2:0.273516441062
1 3:0.308805961086
1 4:0.885512788922
1 5:0.180665293342
1 6:0.297546274558
1 7:0.533417263547
1 8:0.415346975636
1 9:0.348613475541
1 10:0.410496296921
1 11:0.487609163446
2 3:0.336767967069
2 4:0.778740739676
2 5:0.278459172922
2 6:0.276438082553
2 7:0.514498478145
2 8:0.410389727386
2 9:0.330966710656
2 10:0.425583260532
2 11:0.508581486693
3 4:1.0
3 5:0.275292403554
3 6:0.380392583531
3 7:0.619868149618
3 8:0.511473840075
3 9:0.477496607833
3 10:0.475541338462
3 11:0.459329321268
4 5:0.818106055025
4 6:0.864105608906
4 7:0.488271997781
4 8:0.6223681089
4 9:0.60401296172
4 10:0.667821053287
4 11:0.832207857357
5 6:0.319389976872
5 7:0.459600677831
5 8:0.325757592783
5 9:0.303846626938
5 10:0.260224206065
5 11:0.34300902299
6 7:0.586288865555
6 8:0.551336996451
6 9:0.426167893404
6 10:0.509858771936
6 11:0.439586131955
7 8:0.314313962503
7 9:0.27690773816
7 10:0.347154489936
7 11:0.527559112855
8 9:0.193772848096
8 10:0.236042268477
8 11:0.458070398468
9 10:0.319240430281
9 11:0.4390397543
10 11:0.359192010571
</hsp>