sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1EVV-A10-A8
X
>1TTT-D10-D8
X
>1TRA-A10-A8
X
>2J00-W10-W8
X
>1H4S-T7-T5
X
>3R8O-V10-V8
X
>1B23-R10-R8
X
</seq>
<hsp>
0 1:0.293103869435
0 2:0.221407869259
0 3:0.202736792874
0 4:0.594608778761
0 5:0.233719527424
0 6:0.531446793947
1 2:0.229914524787
1 3:0.25293245178
1 4:0.639633782822
1 5:0.375005962748
1 6:0.398037672061
2 3:0.246452938162
2 4:0.482200159579
2 5:0.197462497301
2 6:0.565703349733
3 4:0.685092671738
3 5:0.276586025997
3 6:0.473735328135
4 5:0.533145627378
4 6:0.999998650625
5 6:0.618809865613
</hsp>