sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-5995-5950
X
>3U5D-1989-1944
X
>3CCE-02599-02557
X
>2QEX-02619-02629
X
>3KNI-A2630-A2586
X
>1VQ6-02599-02557
X
>3CCQ-02619-02629
X
>3CC7-02619-02629
X
>3CPW-02619-02629
X
>2OTJ-02619-02629
X
>3CME-02619-02629
X
>3CCL-02619-02629
X
>3CMA-02619-02629
X
>3CCJ-02619-02629
X
>3CCU-02619-02629
X
>1VQ5-02619-02629
X
</seq>
<hsp>
0 1:0.0633422413045
0 2:0.164841976545
0 3:0.986306477575
0 4:0.544667974829
0 5:0.127308786168
0 6:0.9856042794
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0 11:0.983003457602
0 12:0.992304474182
0 13:0.969048979966
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0 15:0.971644013245
1 2:0.205228486892
1 3:0.993884618031
1 4:0.562052325949
1 5:0.17203370013
1 6:0.994491382178
1 7:1.0
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1 10:0.984648360988
1 11:0.991278860497
1 12:0.99957890979
1 13:0.978652246795
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1 15:0.980239885621
2 3:0.987790201473
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3 4:0.92387035597
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3 15:0.0795839424758
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7 8:0.025879964094
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7 11:0.02120534958
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8 9:0.0284856237522
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10 11:0.0336305483211
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11 12:0.0454303438303
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12 13:0.15153823523
12 14:0.0664539529511
12 15:0.0634973114939
13 14:0.0920514310572
13 15:0.109553561345
14 15:0.0539710556027
</hsp>