sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1XMQ-A486-A20
X
>2UUB-A486-A20
X
>3AMT-B49-B21
X
>2UXC-A486-A20
X
>1N32-A486-A20
X
>3GCA-A24-A17
X
>1N32-A1338-A1335
X
>3Q50-A24-A17
X
>2UUB-A1338-A1335
X
>3Q51-A23-A16
X
>1FJG-A1338-A1335
X
</seq>
<hsp>
0 1:0.0688690662385
0 2:0.971865669965
0 3:0.0679908475303
0 4:0.0402346257594
0 5:0.348677766072
0 6:0.369352639101
0 7:0.280021715138
0 8:0.410973581142
0 9:0.284489882378
0 10:0.407598037483
1 2:0.98648449873
1 3:0.0432467996741
1 4:0.051290129339
1 5:0.33296123674
1 6:0.354209374681
1 7:0.266670864083
1 8:0.400468037752
1 9:0.257348519911
1 10:0.398605940421
2 3:1.0
2 4:0.960203233332
2 5:0.890708664167
2 6:0.745042887044
2 7:0.885781546175
2 8:0.693852492144
2 9:0.955742675801
2 10:0.714524541945
3 4:0.0620365375521
3 5:0.367289906107
3 6:0.38061581406
3 7:0.301701063339
3 8:0.425531903159
3 9:0.292678265922
3 10:0.426497116606
4 5:0.324045640112
4 6:0.337371552787
4 7:0.253945023413
4 8:0.381292520018
4 9:0.257436131045
4 10:0.378960467615
5 6:0.225619495597
5 7:0.0922654053371
5 8:0.275562731815
5 9:0.1115325713
5 10:0.24471162876
6 7:0.193237179747
6 8:0.064221799382
6 9:0.250481600246
6 10:0.0705319475076
7 8:0.244553233959
7 9:0.0882567518244
7 10:0.215720418574
8 9:0.30833762432
8 10:0.049365355753
9 10:0.28404905185
</hsp>