sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X841-X839
X
>2ZZM-B83-B1
X
>3G78-A355-A287
X
>1ET4-E12-E10
X
>1ET4-D12-D10
X
>1DDY-E12-E10
X
</seq>
<hsp>
0 1:0.34795007858
0 2:0.967149779001
0 3:0.467492276897
0 4:0.450898720825
0 5:0.441669879466
1 2:0.999999045683
1 3:0.394392428183
1 4:0.401011513924
1 5:0.353931463185
2 3:0.775318945677
2 4:0.761426623669
2 5:0.768094441343
3 4:0.0531090475191
3 5:0.0719202463977
4 5:0.0733762042394
</hsp>