sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCR-02119-02117
X
>2QA4-02118-02116
X
>2ZJR-X1859-X1857
X
>1K9M-A2119-A2117
X
>3CPW-02119-02117
X
>3CCU-02119-02117
X
>1YJN-02119-02117
X
>1VQ9-02119-02117
X
>1Q86-A2119-A2117
X
>1JJ2-02119-02117
X
>1YJ9-02119-02117
X
>1S72-02119-02117
X
>1FG0-A110-A108
X
>3CCV-02119-02117
X
>3CCE-02119-02117
X
>1FFK-02072-02070
X
</seq>
<hsp>
0 1:0.0509930590639
0 2:0.960943540533
0 3:0.087931386182
0 4:0.100524618826
0 5:0.0744349178168
0 6:0.0585278069556
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0 12:0.0961957139154
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0 15:0.0901875269518
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1 12:0.0731244779918
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1 15:0.063119167771
2 3:0.999998657323
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12 13:0.0504403514448
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12 15:0.0175050911646
13 14:0.0264199273193
13 15:0.0460210938992
14 15:0.0549888399638
</hsp>