sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CMA-02050-02048
X
>3KNI-A1978-A1976
X
>3CCV-02050-02048
X
>3CCR-02050-02048
X
>3CME-02050-02048
X
>2QA4-02049-02047
X
>3CCJ-02050-02048
X
>1SER-T7-T5
X
>2VQE-A944-A923
X
>2VQF-A944-A923
X
>3KNH-A935-A914
X
>1N32-A944-A923
X
</seq>
<hsp>
0 1:0.148152815016
0 2:0.0306898743894
0 3:0.0764457614805
0 4:0.0370634683616
0 5:0.07964884808
0 6:0.0852496784462
0 7:0.841463130183
0 8:0.978860157524
0 9:0.974885962875
0 10:0.976472177412
0 11:0.98714392234
1 2:0.129695133376
1 3:0.0782619592522
1 4:0.173275666746
1 5:0.0841538660486
1 6:0.0801748462127
1 7:0.735987831001
1 8:0.867778098262
1 9:0.862665375495
1 10:0.864531475501
1 11:0.875037573263
2 3:0.0552184634011
2 4:0.0651585352929
2 5:0.0602003761932
2 6:0.0686608928862
2 7:0.831362102447
2 8:0.968354154221
2 9:0.964189153784
2 10:0.965832954146
2 11:0.976473814685
3 4:0.104947854605
3 5:0.0335644415824
3 6:0.0425570561506
3 7:0.7905058411
3 8:0.922924702847
3 9:0.918428450806
3 10:0.920121073542
3 11:0.930848815837
4 5:0.103487763946
4 6:0.108264685388
4 7:0.859390036929
4 8:0.991396233732
4 9:0.987561786649
4 10:0.989250378635
4 11:1.0
5 6:0.027533562506
5 7:0.806528767124
5 8:0.931676470001
5 9:0.926919819803
5 10:0.929048169104
5 11:0.93978272181
6 7:0.801155391189
6 8:0.936198371623
6 9:0.931300938741
6 10:0.933154661921
6 11:0.943994346645
7 8:0.533310048171
7 9:0.53123101595
7 10:0.520057612765
7 11:0.521662628479
8 9:0.0179229067501
8 10:0.0237239598361
8 11:0.0270026520067
9 10:0.0188490396704
9 11:0.0332149523948
10 11:0.0314038337195
</hsp>