sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHD-A944-A923
X
>3OHC-A944-A923
X
>3U5B-21179-21158
X
>3OGY-A944-A923
X
>3OGE-A944-A923
X
>2J03-A2700-A2697
X
>2J01-A2700-A2697
X
>3R8N-A970-A949
X
>2J02-A497-A507
X
>2J00-A497-A507
X
</seq>
<hsp>
0 1:0.00504951174585
0 2:0.161677138617
0 3:0.0797763253574
0 4:0.0815311126964
0 5:0.406703944044
0 6:0.404086588931
0 7:0.136358968423
0 8:0.929530856594
0 9:0.930798293644
1 2:0.160970167777
1 3:0.0791302224788
1 4:0.0804506263103
1 5:0.406546270284
1 6:0.403915198436
1 7:0.135192745784
1 8:0.927994861364
1 9:0.92926212969
2 3:0.102180262533
2 4:0.102258008999
2 5:0.377243658332
2 6:0.373681182675
2 7:0.0674892760846
2 8:0.998613751369
2 9:0.999999435207
3 4:0.00787652430225
3 5:0.418566633712
3 6:0.415505848198
3 7:0.0964752157434
3 8:0.979427335597
3 9:0.98061765515
4 5:0.418095900003
4 6:0.415010827051
4 7:0.0961156427698
4 8:0.976934301059
4 9:0.978095766084
5 6:0.00817039266965
5 7:0.37794824554
5 8:0.820562984115
5 9:0.821467494198
6 7:0.374372173663
6 8:0.822268657882
6 9:0.82318041628
7 8:0.947854024414
7 9:0.949361519665
8 9:0.0093031197902
</hsp>