sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A1909-A1907
X
>1FJG-A258-A256
X
>3U5H-52701-52698
X
>3R8S-A2572-A2569
X
>2ZJR-X2366-X2363
X
>3R8T-A2571-A2568
X
>3CCE-02455-02452
X
>1FG0-A446-A443
X
</seq>
<hsp>
0 1:0.176554015861
0 2:0.860090592875
0 3:0.843199214149
0 4:0.915641496817
0 5:0.906923964517
0 6:0.88460686815
0 7:0.917610769634
1 2:0.939333415147
1 3:0.922480840124
1 4:0.993666508179
1 5:0.989433103058
1 6:0.965450601863
1 7:0.999999248875
2 3:0.0436938064174
2 4:0.120693370532
2 5:0.0991000843294
2 6:0.0909214463154
2 7:0.11585843696
3 4:0.122082680701
3 5:0.0971779239608
3 6:0.0900238818589
3 7:0.123176445638
4 5:0.0719245391514
4 6:0.0973887055618
4 7:0.0819408370202
5 6:0.102359369478
5 7:0.100397539905
6 7:0.0513866590459
</hsp>