sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-11629-11626
X
>3U5H-51635-51632
X
>1SJF-B58-B56
X
>1SJ4-R57-R55
X
>1VBX-B57-B55
X
>1DRZ-B56-B54
X
>1VBZ-B57-B55
X
>1CX0-B56-B54
X
</seq>
<hsp>
0 1:0.17375356438
0 2:0.762982373917
0 3:0.950741633573
0 4:0.938099528945
0 5:0.940433082835
0 6:0.893351779954
0 7:0.960078718657
1 2:0.844494043663
1 3:1.0
1 4:0.982966666108
1 5:0.991332011463
1 6:0.936728011752
1 7:0.992184507482
2 3:0.433175916778
2 4:0.439122940192
2 5:0.409647772177
2 6:0.374139751314
2 7:0.52029439744
3 4:0.100307025649
3 5:0.0782650914456
3 6:0.134400071844
3 7:0.13607708802
4 5:0.0719774064749
4 6:0.193355729435
4 7:0.154602232916
5 6:0.160715974174
5 7:0.166326288396
6 7:0.181855964458
</hsp>