sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1S72-01616-01449
X
>3U5F-6901-61002
X
>1KD1-A1616-A1449
X
>3OHZ-A1512-A1330
X
>3U5B-2889-2990
X
>3F1H-A1590-A1400
X
>3KNI-A965-A2400
X
>3OHZ-A617-A241
X
>1VQN-0103-034
X
>3OHZ-A1186-A1157
X
</seq>
<hsp>
0 1:0.145446583297
0 2:0.105594043419
0 3:0.325489295662
0 4:0.235126061361
0 5:0.332165111638
0 6:0.305949318034
0 7:0.481674848052
0 8:0.857534227748
0 9:0.974878094222
1 2:0.168489242211
1 3:0.284337890147
1 4:0.181214097788
1 5:0.312087540126
1 6:0.277826861815
1 7:0.390775798091
1 8:0.810961812192
1 9:0.936280591673
2 3:0.323036501849
2 4:0.253080863779
2 5:0.304244888307
2 6:0.325046064984
2 7:0.477489545927
2 8:0.797707978823
2 9:0.924375409915
3 4:0.394756845844
3 5:0.131617758222
3 6:0.366729870493
3 7:0.557452858809
3 8:0.835467907734
3 9:0.904155887487
4 5:0.431820201538
4 6:0.268428458478
4 7:0.349227414639
4 8:0.840748586356
4 9:0.999998682544
5 6:0.371824835163
5 7:0.565023452915
5 8:0.766556116456
5 9:0.826473131384
6 7:0.335400364385
6 8:0.738834073001
6 9:0.845320681102
7 8:0.617763399696
7 9:0.791247203318
8 9:0.286882500777
</hsp>