sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OGY-A966-A1024
X
>3OH5-A492-A513
X
>3P22-C19-A17
X
>3CCJ-0472-0494
X
>1VQ4-0472-0494
X
>3P22-G19-E17
X
>3CC4-0472-0494
X
>3CCU-0472-0494
X
>3CCS-0472-0494
X
</seq>
<hsp>
0 1:0.899841028177
0 2:0.984286222424
0 3:0.83959085571
0 4:0.825730650319
0 5:1.0
0 6:0.79996324806
0 7:0.812832162521
0 8:0.849994845769
1 2:0.347177368746
1 3:0.226254228186
1 4:0.281694371327
1 5:0.360324715291
1 6:0.287818868845
1 7:0.282460922421
1 8:0.300346577674
2 3:0.451505113702
2 4:0.424803536059
2 5:0.123751373184
2 6:0.410075533791
2 7:0.366628156967
2 8:0.356820302206
3 4:0.178722612711
3 5:0.445705689071
3 6:0.185411368871
3 7:0.188395232341
3 8:0.214094154459
4 5:0.399537113079
4 6:0.059174024969
4 7:0.0847216097672
4 8:0.109077276377
5 6:0.394630255722
5 7:0.34813300576
5 8:0.323108205637
6 7:0.0650535922442
6 8:0.103058231694
7 8:0.0599363301956
</hsp>