sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1VQP-02652-02513
X
>3CCJ-0187-0184
X
>1NJI-A235-A252
X
>3CC7-0235-0252
X
>3CCU-0235-0252
X
>3CCL-0235-0252
X
>1Q86-A235-A252
X
>3CXC-0235-0252
X
</seq>
<hsp>
0 1:0.92919495655
0 2:0.187510923575
0 3:0.335502006094
0 4:0.210070936894
0 5:0.222132051261
0 6:0.274704776094
0 7:0.252531684854
1 2:0.951868435825
1 3:0.989606049187
1 4:0.976024285211
1 5:0.903040274221
1 6:1.0
1 7:0.983573927119
2 3:0.182008340399
2 4:0.0654634885514
2 5:0.105574502609
2 6:0.131002417931
2 7:0.135579848818
3 4:0.141955267843
3 5:0.135301691384
3 6:0.157480772401
3 7:0.17223570356
4 5:0.0860150659487
4 6:0.111467072184
4 7:0.105441670993
5 6:0.153564517806
5 7:0.130050231689
6 7:0.17691687688
</hsp>