sequences=13
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5F-61250-61220
X
>3U5D-11073-12616
X
>3U5H-51079-52617
X
>3G9C-P123-P30
X
>2H0S-B82-B31
X
>3B4B-B82-B31
X
>3G9C-R123-R30
X
>3L3C-Q98-Q45
X
>3L3C-R98-R45
X
>2NZ4-S98-S45
X
>3L3C-Q123-Q30
X
>3G9C-R98-R45
X
>2NZ4-Q123-Q30
X
</seq>
<hsp>
0 1:1.0
0 2:0.894551710617
0 3:0.728070418222
0 4:0.619200166169
0 5:0.616013003597
0 6:0.785407951586
0 7:0.815319179217
0 8:0.894503608971
0 9:0.724035641842
0 10:0.712724221754
0 11:0.960638260809
0 12:0.683919011753
1 2:0.203872731023
1 3:0.414030681236
1 4:0.502415966994
1 5:0.547435126989
1 6:0.434506286489
1 7:0.390908474319
1 8:0.445653427218
1 9:0.507523424274
1 10:0.563122178287
1 11:0.419461844629
1 12:0.610875125854
2 3:0.290360047627
2 4:0.385476210629
2 5:0.428027019714
2 6:0.297033841796
2 7:0.306747505332
2 8:0.382137565117
2 9:0.429663171991
2 10:0.444604531484
2 11:0.36634096236
2 12:0.487841352351
3 4:0.218440310758
3 5:0.207475915853
3 6:0.193494659011
3 7:0.2874755832
3 8:0.373509662921
3 9:0.372830527281
3 10:0.23492539286
3 11:0.427767038016
3 12:0.340011412696
4 5:0.117402594502
4 6:0.238023547903
4 7:0.283540783088
4 8:0.380709377249
4 9:0.262715450409
4 10:0.164968363539
4 11:0.419545560331
4 12:0.172078746438
5 6:0.290696412216
5 7:0.365581279057
5 8:0.454684901456
5 9:0.357485727572
5 10:0.169627221446
5 11:0.500609339824
5 12:0.217351410024
6 7:0.149561867819
6 8:0.220811764303
6 9:0.262519119301
6 10:0.223367424029
6 11:0.272271152427
6 12:0.286699037217
7 8:0.115594259288
7 9:0.175589423895
7 10:0.305496738384
7 11:0.168424765595
7 12:0.333356206585
8 9:0.221330625705
8 10:0.37151885339
8 11:0.122831424472
8 12:0.400231434845
9 10:0.318054460258
9 11:0.26206449556
9 12:0.282279449649
10 11:0.419286081172
10 12:0.154408582787
11 12:0.42387782214
</hsp>