sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3D2X-A56-A25
X
>2CKY-B56-B25
X
>3D2X-B56-B25
X
>2GDI-X59-X28
X
>2GDI-Y59-Y28
X
>3D2G-A56-A25
X
>3D2V-B56-B25
X
>2HOL-A56-A25
X
>3D2G-B56-B25
X
>2HOJ-A56-A25
X
>3OHY-A673-A775
X
>3OI0-A673-A775
X
</seq>
<hsp>
0 1:0.502092364822
0 2:0.223904568144
0 3:0.480865266826
0 4:0.576900549145
0 5:0.697266429992
0 6:0.299691931793
0 7:0.423710491006
0 8:0.392310246862
0 9:0.493655360485
0 10:0.855770341238
0 11:0.882752247018
1 2:0.438956361673
1 3:0.544623301411
1 4:0.459212043208
1 5:0.55765829599
1 6:0.505732351729
1 7:0.521525873566
1 8:0.309446442409
1 9:0.623546785101
1 10:0.918299078315
1 11:0.947006326621
2 3:0.322241339047
2 4:0.449159248172
2 5:0.584538283258
2 6:0.287969911659
2 7:0.410180281073
2 8:0.378060565025
2 9:0.481029434609
2 10:0.782109032291
2 11:0.809861274559
3 4:0.281177676736
3 5:0.688370612635
3 6:0.343585524031
3 7:0.383580708931
3 8:0.498996445195
3 9:0.434461633508
3 10:0.672470990048
3 11:0.706925205103
4 5:0.593766602432
4 6:0.374422056561
4 7:0.36457898828
4 8:0.405764638189
4 9:0.395757465328
4 10:0.698640567892
4 11:0.735779316335
5 6:0.624523500858
5 7:0.70337444824
5 8:0.507499102192
5 9:0.712217601441
5 10:0.975347563456
5 11:1.0
6 7:0.189013145579
6 8:0.313873948598
6 9:0.262402782256
6 10:0.749571251213
6 11:0.78474761176
7 8:0.374830434231
7 9:0.299590051829
7 10:0.825066670391
7 11:0.864569717008
8 9:0.406696034819
8 10:0.808193978235
8 11:0.838524050571
9 10:0.588761091186
9 11:0.6261723073
10 11:0.0509951015041
</hsp>