sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNH-A1242-A1227
X
>2QA4-01091-01187
X
>3CXC-01092-01188
X
>1VQ7-01092-01188
X
>3CCJ-01092-01188
X
>1VQ5-01092-01188
X
>3CD6-01092-01188
X
>1VQM-01092-01188
X
>1VQN-01092-01188
X
>3CCR-01092-01188
X
</seq>
<hsp>
0 1:0.843122352041
0 2:0.907930356035
0 3:0.896692684213
0 4:0.926246546193
0 5:0.921792743154
0 6:0.961209886586
0 7:0.868505578502
0 8:0.873039732966
0 9:1.0
1 2:0.204032841042
1 3:0.163293680945
1 4:0.278889424173
1 5:0.204377761188
1 6:0.239407525995
1 7:0.216231137276
1 8:0.224741106687
1 9:0.253001515903
2 3:0.0932489427016
2 4:0.219129595187
2 5:0.103271893835
2 6:0.154430339106
2 7:0.137966759245
2 8:0.144879291812
2 9:0.221137472706
3 4:0.201301561518
3 5:0.0596370910158
3 6:0.126547526195
3 7:0.0847455481183
3 8:0.093986156983
3 9:0.177104393916
4 5:0.212237748143
4 6:0.119800261037
4 7:0.220867157383
4 8:0.193296897518
4 9:0.332931955846
5 6:0.129470147707
5 7:0.097422361173
5 8:0.119283360452
5 9:0.188651012417
6 7:0.166144102254
6 8:0.141214318358
6 9:0.227669562325
7 8:0.0569232699819
7 9:0.201100208989
8 9:0.203489576557
</hsp>