sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-12171-12203
X
>3KNK-A1190-A1165
X
>3I56-01547-01563
X
>2QA4-01546-01562
X
>1YJN-01547-01563
X
>1YJ9-01547-01563
X
>2J00-A1281-A1307
X
>1VQ6-01547-01563
X
>3EPH-E54-E15
X
>1Q86-A1547-A1563
X
>1QVG-01547-01563
X
>1B23-R54-R16
X
</seq>
<hsp>
0 1:0.880308957469
0 2:0.920355967109
0 3:0.850703626398
0 4:0.953658586787
0 5:0.927218513812
0 6:1.0
0 7:0.931375495178
0 8:0.81386903442
0 9:0.910970169564
0 10:0.912644347946
0 11:0.944528615099
1 2:0.161721957146
1 3:0.199602275234
1 4:0.216576586122
1 5:0.176907007997
1 6:0.144759602163
1 7:0.174052370842
1 8:0.161565696662
1 9:0.192350634764
1 10:0.176270208607
1 11:0.162512413858
2 3:0.113518249907
2 4:0.067622279089
2 5:0.0394100294774
2 6:0.126958626508
2 7:0.0504189408135
2 8:0.219667100018
2 9:0.0620357715873
2 10:0.061734655641
2 11:0.135894536819
3 4:0.126893155563
3 5:0.1025459861
3 6:0.21915429137
3 7:0.109894931302
3 8:0.239950330754
3 9:0.0781957701126
3 10:0.101096021536
3 11:0.215274545732
4 5:0.051354901212
4 6:0.152267024172
4 7:0.0481894482285
4 8:0.27148994973
4 9:0.0642568843539
4 10:0.0827971655956
4 11:0.166664279898
5 6:0.135784484089
5 7:0.038523715248
5 8:0.227063173153
5 9:0.0346622017561
5 10:0.0372145487974
5 11:0.138957233856
6 7:0.129990432259
6 8:0.244247692655
6 9:0.165701267312
6 10:0.150814356769
6 11:0.127563230604
7 8:0.243055550708
7 9:0.0571155623487
7 10:0.0715172074865
7 11:0.15329757169
8 9:0.234022235719
8 10:0.203748010252
8 11:0.167449221977
9 10:0.0416604084223
9 11:0.165836876993
10 11:0.131385908735
</hsp>