sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1XMQ-A1271-A1208
X
>2UUA-A1276-A1213
X
>3R8N-A1298-A1235
X
>1N32-A1276-A1213
X
>3R8O-A1298-A1235
X
>2UUB-A1276-A1213
X
>2VQF-A1276-A1213
X
>2UXC-A1276-A1213
X
>2VQE-A1276-A1213
X
>1FJG-A1276-A1213
X
</seq>
<hsp>
0 1:0.189729919175
0 2:0.455968267892
0 3:0.157855170464
0 4:0.889940282853
0 5:0.186722393652
0 6:0.313146380531
0 7:0.264622644227
0 8:0.337287950406
0 9:0.371126744836
1 2:0.526430609895
1 3:0.185124262129
1 4:1.0
1 5:0.179856755217
1 6:0.379019395264
1 7:0.339628879245
1 8:0.398282245167
1 9:0.381785154688
2 3:0.390141328306
2 4:0.743518392783
2 5:0.37679677451
2 6:0.478689197149
2 7:0.402037846782
2 8:0.368796819903
2 9:0.345517279622
3 4:0.841433253185
3 5:0.107953851187
3 6:0.272819400276
3 7:0.192392174403
3 8:0.269759173965
3 9:0.27684027917
4 5:0.869350108381
4 6:0.75724634408
4 7:0.700016751752
4 8:0.79045115445
4 9:0.826020204233
5 6:0.326690284436
5 7:0.231998012334
5 8:0.316847345758
5 9:0.277395190715
6 7:0.15749228894
6 8:0.175297435794
6 9:0.269177304133
7 8:0.218856923221
7 9:0.253683375115
8 9:0.199603181179
</hsp>