sequences=18
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1G-A1346-A1329
X
>3OHZ-A799-A783
X
>2J02-A957-A1196
X
>3OHD-A704-A709
X
>2VQF-A1456-A1393
X
>3CCR-0776-0843
X
>3CMA-0834-0823
X
>1YIJ-047-079
X
>1VQP-02467-02479
X
>1YIJ-0289-0338
X
>3OHJ-A1757-A1889
X
>1VQK-01560-01550
X
>3R8T-A15-A523
X
>3CD6-0365-0261
X
>3CC7-0365-0261
X
>3OHJ-A31-A456
X
>1ZHO-B33-B4
X
>1QVG-0112-0108
X
</seq>
<hsp>
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0 2:0.812682629792
0 3:0.825765959929
0 4:0.999998888907
0 5:0.62600820438
0 6:0.656159016349
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15 16:0.316377659565
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16 17:0.303939137445
</hsp>