sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2CKY-B61-B52
X
>3CCQ-0468-018
X
>3CMA-0468-018
X
>3G71-02034-02497
X
>2VPL-B46-B0
X
>3OGY-A629-A566
X
>3R8T-A2507-A2561
X
>3KNH-A318-A297
X
>3KNI-B16-B65
X
</seq>
<hsp>
0 1:0.59954921693
0 2:0.566390637349
0 3:0.510506775347
0 4:0.403361421564
0 5:0.799663659884
0 6:0.530556811337
0 7:1.0
0 8:0.956314380993
1 2:0.175599223635
1 3:0.177421521605
1 4:0.262255743708
1 5:0.578733681178
1 6:0.440564863973
1 7:0.586206052648
1 8:0.826396936418
2 3:0.150422107461
2 4:0.219662559591
2 5:0.529816525645
2 6:0.45804412894
2 7:0.683631749415
2 8:0.885998209504
3 4:0.182098786738
3 5:0.452212900321
3 6:0.436478708434
3 7:0.621165495676
3 8:0.756703787293
4 5:0.578343914606
4 6:0.372147797693
4 7:0.694593553092
4 8:0.811169951323
5 6:0.766161832641
5 7:0.709074078571
5 8:0.662920734294
6 7:0.684061843634
6 8:0.832923195121
7 8:0.53420752134
</hsp>