sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHC-A1240-A1247
X
>2QA4-02359-02341
X
>3OGY-A944-A935
X
>3KNK-A392-A412
X
>2J03-A1179-A1167
X
>2J02-A657-A689
X
>2J03-A1424-A1468
X
>3OGY-A375-A368
X
>3CC2-01155-01162
X
</seq>
<hsp>
0 1:0.707255381763
0 2:0.975388646964
0 3:0.966882673447
0 4:0.615703117611
0 5:0.778013815056
0 6:0.972346287434
0 7:0.917755866951
0 8:0.999999996096
1 2:0.951791538468
1 3:0.845314598485
1 4:0.508731423623
1 5:0.501640259066
1 6:0.679990149118
1 7:0.591176267875
1 8:0.745071541045
2 3:0.597361434886
2 4:0.689090875069
2 5:0.733166405207
2 6:0.827776686704
2 7:0.668697223048
2 8:0.547832973451
3 4:0.722673363449
3 5:0.561397273605
3 6:0.361806221214
3 7:0.337634650806
3 8:0.294161655605
4 5:0.293563414995
4 6:0.71832602486
4 7:0.606473416606
4 8:0.600185836021
5 6:0.492718096749
5 7:0.419584846316
5 8:0.418506938571
6 7:0.203291878328
6 8:0.350192877729
7 8:0.241285282557
</hsp>