sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A718-A711
X
>2QA4-01220-01052
X
>1N8R-A562-A571
X
>3CMA-01101-01180
X
>1M90-A1248-A1228
X
>3CCR-01105-01176
X
>1KD1-A866-A858
X
>1JJ2-994-987
X
>3R8S-A757-A737
X
</seq>
<hsp>
0 1:0.40963156719
0 2:0.489365989099
0 3:0.661323440763
0 4:0.738759181504
0 5:0.907621757121
0 6:0.929398540087
0 7:0.876197034113
0 8:0.999999401079
1 2:0.343692270624
1 3:0.544373516238
1 4:0.567311541842
1 5:0.684378714225
1 6:0.733379260338
1 7:0.681498291239
1 8:0.834929978076
2 3:0.253702914964
2 4:0.367930106333
2 5:0.540938716859
2 6:0.518076081381
2 7:0.493087559587
2 8:0.617733696868
3 4:0.456011140104
3 5:0.530929428482
3 6:0.454557927591
3 7:0.362452140404
3 8:0.49343826171
4 5:0.339269482189
4 6:0.383667915038
4 7:0.505148173785
4 8:0.490707965614
5 6:0.301796282095
5 7:0.327944668718
5 8:0.308118447441
6 7:0.323017710013
6 8:0.336766646349
7 8:0.270885874332
</hsp>