sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OI0-A971-A1019
X
>3OHD-A1052-A1059
X
>3KNH-A1170-A1025
X
>1NJI-A544-A589
X
>1Q81-A2733-A2701
X
>2UUB-A590-A606
X
</seq>
<hsp>
0 1:0.999988332039
0 2:0.95922090683
0 3:0.465334391213
0 4:0.646552871465
0 5:0.657450909611
1 2:0.442022041901
1 3:0.689790862063
1 4:0.478641311225
1 5:0.488366823247
2 3:0.526136231106
2 4:0.392023083013
2 5:0.361976027642
3 4:0.270130792508
3 5:0.292175789675
4 5:0.289447762298
</hsp>