sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CD6-01143-01121
X
>3CMA-073-081
X
>3CPW-0706-0697
X
>2YDH-A59-A41
X
>1VQ9-0687-0714
X
>2UUA-A1246-A1241
X
</seq>
<hsp>
0 1:0.830127864638
0 2:0.82553299987
0 3:0.715098196935
0 4:0.999999987021
0 5:0.763897688291
1 2:0.742249340831
1 3:0.64600619576
1 4:0.742936077721
1 5:0.799731179352
2 3:0.307826795099
2 4:0.286324544153
2 5:0.219687473576
3 4:0.465028897116
3 5:0.389971867446
4 5:0.328333683776
</hsp>