sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2RD2-B70-B69
X
>1EXD-B69-B68
X
>1QRT-B70-B69
X
>1O0C-B70-B69
X
>1GTS-B70-B69
X
>1QRS-B70-B69
X
>2RE8-B70-B69
X
>1QTQ-B70-B69
X
>1GTR-B70-B69
X
>1EUY-B69-B68
X
</seq>
<hsp>
0 1:0.413976424505
0 2:0.678251572589
0 3:0.300944274582
0 4:0.902550054851
0 5:0.595725749767
0 6:0.35077201795
0 7:0.485588458463
0 8:0.389416842751
0 9:0.459551489092
1 2:0.612931552446
1 3:0.460575506439
1 4:0.740311230981
1 5:0.379809339434
1 6:0.32362059738
1 7:0.494014540821
1 8:0.424931628976
1 9:0.349247171205
2 3:0.805463648169
2 4:0.389947621846
2 5:0.367583299238
2 6:0.496400756881
2 7:0.839102875065
2 8:0.340033783261
2 9:0.56717899057
3 4:0.999998787223
3 5:0.620961288417
3 6:0.407539962815
3 7:0.296432586389
3 8:0.53365776927
3 9:0.365180919005
4 5:0.44988884404
4 6:0.717165184217
4 7:0.936733861974
4 8:0.535871339703
4 9:0.729690676156
5 6:0.349509828263
5 7:0.607158879717
5 8:0.346377757305
5 9:0.345629854652
6 7:0.542010337301
6 8:0.315721323748
6 9:0.338651760039
7 8:0.568369353646
7 9:0.342903265475
8 9:0.397946809645
</hsp>