sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8O-A1001-A1003
X
>2ZJR-X2076-X2133
X
>2VQF-A708-A744
X
>2UUB-A708-A744
X
>2UUA-A708-A744
X
>2UXC-A708-A744
X
>2VQE-A708-A744
X
>1XMQ-A708-A744
X
</seq>
<hsp>
0 1:1.0
0 2:0.580153071809
0 3:0.572990651115
0 4:0.580545329592
0 5:0.581134483409
0 6:0.579990554026
0 7:0.576322118648
1 2:0.67388729309
1 3:0.69090440067
1 4:0.676349253425
1 5:0.683459648837
1 6:0.680248266175
1 7:0.668938930565
2 3:0.0321795470133
2 4:0.0181763447252
2 5:0.0283428685248
2 6:0.0221423052894
2 7:0.0235264062058
3 4:0.0217095826116
3 5:0.013591985222
3 6:0.0218920256361
3 7:0.029714252959
4 5:0.0185531528847
4 6:0.0121204568746
4 7:0.0145720600115
5 6:0.0153046464215
5 7:0.0255342018002
6 7:0.0171716059909
</hsp>