sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5B-21446-21178
X
>3U5D-12480-12479
X
>3U5F-61458-61190
X
>3CCJ-02323-02326
X
>3CCE-02323-02326
X
>1FFK-02276-02279
X
>3I56-02323-02326
X
</seq>
<hsp>
0 1:0.686452565989
0 2:0.0475097449065
0 3:0.607490632302
0 4:0.637198350214
0 5:0.596867689477
0 6:0.572883961171
1 2:0.690258145938
1 3:0.975530041491
1 4:1.0
1 5:0.973181473876
1 6:0.958923461284
2 3:0.629795108324
2 4:0.658634110586
2 5:0.617194931793
2 6:0.594220064706
3 4:0.0359579391571
3 5:0.0516489806794
3 6:0.054970041383
4 5:0.0574543774016
4 6:0.0753638610742
5 6:0.0317143557196
</hsp>