sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CME-02257-02172
X
>3CCM-02257-02172
X
>2J01-A1658-A1492
X
>2J03-A1658-A1492
X
>3CCJ-02257-02172
X
>3CMA-02257-02172
X
>3OHZ-A1568-A2529
X
>1XMQ-A374-A58
X
>3U5H-5287-52353
X
>1N32-A374-A58
X
>1FJG-A1313-A1311
X
>1FJG-A374-A58
X
>2VQE-A1313-A1311
X
>2UXC-A1313-A1311
X
>2UUA-A1313-A1311
X
>1XMQ-A1308-A1306
X
</seq>
<hsp>
0 1:0.0615104859305
0 2:0.466492243603
0 3:0.466495693501
0 4:0.153470833386
0 5:0.0671242739526
0 6:0.273839799907
0 7:0.257242917456
0 8:0.65570691306
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0 10:0.394854796595
0 11:0.229071248145
0 12:0.346078681662
0 13:0.361036475581
0 14:0.362970248
0 15:0.343127067357
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1 3:0.504015694986
1 4:0.157493055861
1 5:0.032325677227
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1 8:0.660917743293
1 9:0.228746815132
1 10:0.371869782944
1 11:0.201774252547
1 12:0.321159816321
1 13:0.337730538065
1 14:0.336990707769
1 15:0.322669110361
2 3:0.0115218980984
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3 4:0.520225328613
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3 12:0.620233719558
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3 15:0.614963375661
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10 11:0.252367867865
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11 12:0.207129006347
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12 13:0.0391622159259
12 14:0.0368994604852
12 15:0.0432767232092
13 14:0.0335587439457
13 15:0.0569687456794
14 15:0.0473074057076
</hsp>