sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X2605-X2607
X
>3KNI-A2725-A2727
X
>2J01-A2697-A2699
X
>3KNK-A2725-A2727
X
>3OI1-A2650-A2652
X
>3OHK-A2650-A2652
X
>3OHZ-A2650-A2652
X
>3OHJ-A2650-A2652
X
>3OH7-A2650-A2652
X
>3OH5-A2650-A2652
X
</seq>
<hsp>
0 1:1.0
0 2:0.587714991621
0 3:0.763201994104
0 4:0.877224451545
0 5:0.792265737219
0 6:0.837914353442
0 7:0.791190805998
0 8:0.604200857988
0 9:0.58735150395
1 2:0.635229241174
1 3:0.311919357672
1 4:0.429927692029
1 5:0.414793690279
1 6:0.409249705325
1 7:0.40290217756
1 8:0.569692038061
1 9:0.557266393563
2 3:0.469453200752
2 4:0.398005502378
2 5:0.337066599646
2 6:0.365065791117
2 7:0.355391770898
2 8:0.205676156481
2 9:0.204545024098
3 4:0.386598381134
3 5:0.351661963537
3 6:0.353648323155
3 7:0.338349633279
3 8:0.364687323644
3 9:0.348389324405
4 5:0.243954165839
4 6:0.0591241806852
4 7:0.257116581166
4 8:0.341347994067
4 9:0.339717686162
5 6:0.2064762695
5 7:0.0597796521492
5 8:0.321383141298
5 9:0.320012099682
6 7:0.215942364873
6 8:0.313279068323
6 9:0.308109416734
7 8:0.335091710783
7 9:0.329790206879
8 9:0.0555222268645
</hsp>