sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-12971-12969
X
>3U5H-52972-52970
X
>3OHK-A893-A894
X
>3OHJ-A893-A894
X
>2J03-A893-A894
X
>2J01-A893-A894
X
>3OHZ-A893-A894
X
>3OI1-A893-A894
X
>3OH7-A893-A894
X
>3OH5-A893-A894
X
</seq>
<hsp>
0 1:0.401614943524
0 2:0.974113660526
0 3:0.97595660798
0 4:0.963843722547
0 5:0.96644049975
0 6:0.980542127744
0 7:0.977255771416
0 8:0.99935689357
0 9:0.999999440238
1 2:0.929637937778
1 3:0.931237486591
1 4:0.923401250756
1 5:0.925893630861
1 6:0.934517030837
1 7:0.931179704538
1 8:0.957838802896
1 9:0.958448471452
2 3:0.00291516613166
2 4:0.0574995289322
2 5:0.0573705479328
2 6:0.0320910129786
2 7:0.030891171765
2 8:0.0439059223009
2 9:0.0440803291663
3 4:0.0589031164085
3 5:0.0586537039918
3 6:0.0316394254109
3 7:0.0307129095318
3 8:0.0421871287539
3 9:0.0423428109208
4 5:0.00316326734757
4 6:0.0531222860614
4 7:0.0516776373778
4 8:0.0778540389318
4 9:0.0780948216357
5 6:0.0519980470083
5 7:0.0507449787954
5 8:0.0767003303229
5 9:0.0769241767988
6 7:0.00399468487691
6 8:0.0589063159406
6 9:0.0588292569804
7 8:0.0600673006279
7 9:0.0600290766844
8 9:0.00111341417959
</hsp>