sequences=13
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3SD1-A35-A6
X
>3SD3-A35-A6
X
>2XDB-G8-G25
X
>3F1H-A2554-A1149
X
>3F1F-A2554-A1149
X
>2XD0-V8-V25
X
>3OH7-A2400-A1079
X
>3OH5-A2400-A1079
X
>2J03-A2447-A1079
X
>2J01-A2447-A1079
X
>3OHZ-A2400-A1079
X
>3OI1-A2400-A1079
X
>1N8R-A2446-A1193
X
</seq>
<hsp>
0 1:0.0221835089575
0 2:0.584285140336
0 3:0.999260856057
0 4:0.997902687255
0 5:0.606750830639
0 6:0.998241987493
0 7:0.995909185616
0 8:0.98961709967
0 9:0.989939586228
0 10:0.982065051231
0 11:0.97929981504
0 12:0.94866861474
1 2:0.589475177251
1 3:0.999999798247
1 4:0.998631000239
1 5:0.612528685762
1 6:0.998328134483
1 7:0.995982834427
1 8:0.989669324311
1 9:0.990002851739
1 10:0.982002140791
1 11:0.979256102583
1 12:0.948650311139
2 3:0.71321719157
2 4:0.712489965669
2 5:0.0710122543477
2 6:0.708825292056
2 7:0.707361806247
2 8:0.703955942112
2 9:0.704427126612
2 10:0.698058024205
2 11:0.696933742607
2 12:0.665813488882
3 4:0.00509384612765
3 5:0.677956272988
3 6:0.0563718466629
3 7:0.0586443956204
3 8:0.0623461784107
3 9:0.0635325217713
3 10:0.0830427576667
3 11:0.0816176277839
3 12:0.0869073155924
4 5:0.6773476639
4 6:0.054011071623
4 7:0.0564557687012
4 8:0.0600451448892
4 9:0.0610158219288
4 10:0.079841919394
4 11:0.0783928641474
4 12:0.0841456152406
5 6:0.676113149348
5 7:0.674979583567
5 8:0.671495719197
5 9:0.672132489456
5 10:0.667334072409
5 11:0.666365570585
5 12:0.637037930175
6 7:0.00828407850557
6 8:0.0189154464599
6 9:0.0179035007998
6 10:0.0368747646185
6 11:0.0371039994779
6 12:0.0651693358819
7 8:0.0137151018732
7 9:0.0141348516301
7 10:0.0362778576375
7 11:0.0369340588221
7 12:0.065514100168
8 9:0.00584572792656
8 10:0.0344161179063
8 11:0.0351685317431
8 12:0.0658944524463
9 10:0.0297217978327
9 11:0.0304014695244
9 12:0.063724943695
10 11:0.0066656675689
10 12:0.0541629639323
11 12:0.0500349588293
</hsp>