sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3B4A-B18-B44
X
>2H0Z-B18-B44
X
>2H0X-B18-B44
X
>3B4B-B18-B44
X
>3B4C-B18-B44
X
>2H0S-B18-B44
X
>2HO7-B18-B44
X
>2HO6-B18-B44
X
>2H0W-B18-B44
X
>2GCV-B18-B44
X
</seq>
<hsp>
0 1:0.878742263342
0 2:0.999993382198
0 3:0.726500975487
0 4:0.91463347759
0 5:0.477469087682
0 6:0.52206034565
0 7:0.649471024575
0 8:0.745542377586
0 9:0.816895268143
1 2:0.259908674586
1 3:0.603847173957
1 4:0.601621897265
1 5:0.506871321353
1 6:0.491042753502
1 7:0.669101423227
1 8:0.25945412177
1 9:0.300436433066
2 3:0.707927726561
2 4:0.49520258442
2 5:0.652188764515
2 6:0.649817564791
2 7:0.873212982034
2 8:0.401745336518
2 9:0.382086018419
3 4:0.900985016346
3 5:0.430516818811
3 6:0.556993573004
3 7:0.548002342151
3 8:0.470409665674
3 9:0.464929697407
4 5:0.668683527247
4 6:0.659665856599
4 7:0.954673868036
4 8:0.601861434304
4 9:0.606391874492
5 6:0.234082991057
5 7:0.397663859688
5 8:0.361883607891
5 9:0.426840719006
6 7:0.3862896893
6 8:0.355977878585
6 9:0.478873340458
7 8:0.487493479237
7 9:0.562607715049
8 9:0.161916612652
</hsp>