sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCJ-0661-0660
X
>3F1F-A453-A452
X
>3F1H-A453-A452
X
>3CCJ-01413-01412
X
>2J03-A446-A445
X
>3CMA-01413-01412
X
>1I6U-D12-D11
X
>1I6U-C12-C11
X
</seq>
<hsp>
0 1:0.510953921107
0 2:0.508883511344
0 3:1.0
0 4:0.464030326067
0 5:0.957501281097
0 6:0.937674550992
0 7:0.944015092886
1 2:0.00427759620468
1 3:0.533664926937
1 4:0.0625196097264
1 5:0.486641891453
1 6:0.459282960524
1 7:0.469589870308
2 3:0.536069726173
2 4:0.0599505614583
2 5:0.489065954818
2 6:0.461407646113
2 7:0.471610905699
3 4:0.577310853296
3 5:0.0485875600196
3 6:0.107556997015
3 7:0.112847656756
4 5:0.531220209579
4 6:0.504455499855
4 7:0.513466919657
5 6:0.0743851922288
5 7:0.0875733993718
6 7:0.026275055511
</hsp>